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Report for CCDS10654.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10654.1 Public Homo sapiens 16 PRRT2 24 110 108 CCDS HistoryNCBI Gene:112476Re-query CCDS DB by CCDS ID:10654.1Re-query CCDS DB by GeneID:112476See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10654.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358758.12 ENSP00000351608.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358758.12Link to Ensembl Protein Viewer:ENSP00000351608.7Re-query CCDS DB by Nucleotide ID:ENST00000358758Re-query CCDS DB by Protein ID:ENSP00000351608
Original member Current member EBI ENST00000572820.2 ENSP00000458291.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572820.2Link to Ensembl Protein Viewer:ENSP00000458291.2Re-query CCDS DB by Nucleotide ID:ENST00000572820Re-query CCDS DB by Protein ID:ENSP00000458291
Original member Current member EBI ENST00000637064.1 ENSP00000490826.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637064.1Link to Ensembl Protein Viewer:ENSP00000490826.1Re-query CCDS DB by Nucleotide ID:ENST00000637064Re-query CCDS DB by Protein ID:ENSP00000490826
Original member Current member NCBI NM_145239.3 NP_660282.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145239.3Link to Protein Sequence:NP_660282.2Re-query CCDS DB by Nucleotide ID:NM_145239Re-query CCDS DB by Protein ID:NP_660282Link to BLAST:NP_660282.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660282.2 340 Q7Z6L0-1 340 100% 0 0

Chromosomal Locations for CCDS 10654.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29813055 29813933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29814333 29814465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29814628 29814638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCAGCCAGCAGCTCTGAGATCTCTGAGATGAAGGGGGTTGAGGAGAGTCCCAAGGTTCCAGGCGAAG
GGCCTGGCCATTCTGAAGCTGAAACTGGCCCTCCCCAGGTCCTAGCAGGGGTACCAGACCAGCCAGAGGC
CCCGCAGCCAGGTCCAAACACCACTGCGGCCCCTGTGGACTCAGGGCCCAAGGCTGGGCTGGCTCCAGAA
ACCACAGAGACCCCGGCTGGGGCCTCAGAAACAGCCCAGGCCACAGACCTCAGCTTAAGCCCAGGAGGGG
AATCAAAGGCCAACTGCAGCCCCGAAGACCCATGCCAAGAAACAGTGTCCAAACCAGAAGTGAGCAAAGA
GGCCACTGCAGACCAGGGGTCCAGGCTGGAGTCTGCAGCCCCACCTGAACCAGCCCCAGAGCCTGCTCCC
CAACCAGACCCCCGGCCAGATTCCCAGCCTACCCCCAAGCCAGCCCTTCAACCAGAGCTCCCTACCCAGG
AGGACCCCACCCCTGAGATTCTGTCTGAGAGTGTAGGGGAAAAGCAAGAGAATGGGGCAGTGGTGCCCCT
GCAGGCTGGTGATGGGGAAGAGGGCCCAGCCCCTGAGCCTCACTCACCACCCTCAAAAAAATCCCCCCCA
GCCAATGGGGCCCCCCCCCGAGTGCTGCAGCAGCTGGTTGAGGAGGATCGAATGAGAAGGGCACACAGTG
GGCATCCAGGATCTCCCCGAGGTAGCCTGAGCCGCCACCCCAGCTCCCAGTTGGCAGGTCCTGGGGTGGA
GGGGGGTGAAGGCACCCAGAAACCTCGGGACTACATCATCCTTGCCATCCTGTCCTGCTTCTGCCCCATG
TGGCCTGTCAACATCGTGGCCTTCGCTTATGCTGTCATGTCCCGGAACAGCCTGCAGCAGGGGGACGTGG
ACGGGGCCCAGCGTCTGGGCCGGGTAGCCAAGCTCTTAAGCATCGTGGCGCTGGTGGGGGGAGTCCTCAT
CATCATCGCCTCCTGCGTCATCAACTTAGGCGTGTATAAGTGA

Translation (340 aa):
MAASSSEISEMKGVEESPKVPGEGPGHSEAETGPPQVLAGVPDQPEAPQPGPNTTAAPVDSGPKAGLAPE
TTETPAGASETAQATDLSLSPGGESKANCSPEDPCQETVSKPEVSKEATADQGSRLESAAPPEPAPEPAP
QPDPRPDSQPTPKPALQPELPTQEDPTPEILSESVGEKQENGAVVPLQAGDGEEGPAPEPHSPPSKKSPP
ANGAPPRVLQQLVEEDRMRRAHSGHPGSPRGSLSRHPSSQLAGPGVEGGEGTQKPRDYIILAILSCFCPM
WPVNIVAFAYAVMSRNSLQQGDVDGAQRLGRVAKLLSIVALVGGVLIIIASCVINLGVYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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