NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS35137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35137.1 Public Homo sapiens 9 NR6A1 24 110 108 CCDS HistoryNCBI Gene:2649Re-query CCDS DB by CCDS ID:35137.1Re-query CCDS DB by GeneID:2649See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35137.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487099.7 ENSP00000420267.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000487099.7Link to Ensembl Protein Viewer:ENSP00000420267.1Re-query CCDS DB by Nucleotide ID:ENST00000487099Re-query CCDS DB by Protein ID:ENSP00000420267
Original member Current member NCBI NM_033334.4 NP_201591.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033334.4Link to Protein Sequence:NP_201591.2Re-query CCDS DB by Nucleotide ID:NM_033334Re-query CCDS DB by Protein ID:NP_201591Link to BLAST:NP_201591.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_201591.2 480 Q15406-1 480 100% 0 0

Chromosomal Locations for CCDS 35137.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 124522705 124522793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124524721 124524873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124526779 124526900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124535878 124536132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124538092 124538319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124540033 124540187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124543802 124543857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124554328 124554570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124733308 124733349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 124771020 124771119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1443 nt):
ATGGAGCGGGACGAACCGCCGCCTAGCGGAGGGGGAGGCGGCGGGGGCTCGGCGGGGTTCCTGGAGCCTC
CCGCCGCGCTCCCTCCGCCGCCGCGCAACGGTTTCTGTCAGGATGAATTGGCAGAGCTTGACCCAGGCAC
TATTTCTGTTTCAGATGATCGGGCTGAACAACGAACCTGTCTCATTTGTGGGGACCGCGCTACAGGCTTG
CACTATGGGATCATCTCCTGTGAGGGCTGCAAAGGGTTTTTCAAGCGGAGCATTTGCAACAAACGGGTAT
ATCGATGCAGTCGTGACAAGAACTGTGTCATGTCTCGGAAGCAGAGGAACAGGTGCCAGTACTGCCGCCT
GCTCAAATGCCTCCAGATGGGGATGAACCGGAAGGCTATCAGAGAAGATGGCATGCCTGGAGGCCGGAAT
AAGAGCATTGGGCCAGTCCAGATATCGGAAGAAGAAATCGAAAGGATCATGTCTGGGCAGGAGTTTGAGG
AAGAGGCCAATCACTGGAGCAACCATGGTGATAGTGACCACAGTTCCCCTGGGAACAGGGCTTCGGAGAG
CAACCAGCCCTCACCAGGCTCCACACTGTCTTCCAGTAGGTCTGTGGAACTGAATGGATTCATGGCCTTC
AGGGAACAGTACATGGGAATGTCTGTGCCTCCACATTACCAATATATACCGCACCTTTTTAGCTATTCTG
GCCACTCACCACTTCTGCCCCAACAAGCTCGCAGCCTGGATCCCCAGTCATACAGTCTGATTCACCAGCT
GTTATCAGCCGAGGACCTGGAACCATTGGGCACGCCCATGTTGATTGAAGATGGATACGCTGTGACACAG
GCAGAACTATTTGCCCTGCTTTGCCGCCTGGCCGACGAGCTGCTCTTTAGGCAGATTGCCTGGATCAAGA
AACTGCCTTTCTTCTGCGAGCTCTCAATCAAGGATTACACGTGCCTCTTGAGCTCTACGTGGCAGGAGCT
AATCCTGCTGTCTTCCCTCACCGTTTACAGCAAGCAGATCTTTGGGGAACTGGCTGATGTCACTGCCAAG
TACTCGCCCTCCGATGAAGAACTACACAGATTTAGTGATGAAGGGATGGAGGTGATCGAGCGGCTCATCT
ACCTCTATCACAAGTTCCATCAGCTAAAGGTCAGCAACGAGGAGTATGCTTGCATGAAAGCAATTAACTT
CCTAAATCAAGATATCAGGGGTCTGACCAGTGCCTCACAGCTGGAACAATTGAATAAACGATACTGGTAC
ATTTGCCAGGATTTTACTGAATATAAATACACACATCAGCCGAACCGCTTTCCTGATCTCATGATGTGCT
TACCTGAGATTCGATATATTGCAGGAAAGATGGTGAATGTGCCCCTGGAGCAGCTGCCCCTCCTCTTTAA
GGTGGTGCTGCATTCCTGCAAGACCAGTGTGGGCAAGGAATGA

Translation (480 aa):
MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTCLICGDRATGL
HYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPGGRN
KSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSPGNRASESNQPSPGSTLSSSRSVELNGFMAF
REQYMGMSVPPHYQYIPHLFSYSGHSPLLPQQARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQ
AELFALLCRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAK
YSPSDEELHRFSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWY
ICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH