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Report for CCDS6145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6145.1 Public Homo sapiens 8 CLXN 24 110 108 CCDS HistoryNCBI Gene:79645Re-query CCDS DB by CCDS ID:6145.1Re-query CCDS DB by GeneID:79645See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262103.8 ENSP00000262103.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262103.8Link to Ensembl Protein Viewer:ENSP00000262103.3Re-query CCDS DB by Nucleotide ID:ENST00000262103Re-query CCDS DB by Protein ID:ENSP00000262103
Original member Current member NCBI NM_024593.4 NP_078869.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024593.4Link to Protein Sequence:NP_078869.1Re-query CCDS DB by Nucleotide ID:NM_024593Re-query CCDS DB by Protein ID:NP_078869Link to BLAST:NP_078869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078869.1 211 Q9HAE3-1 211 100% 0 0

Chromosomal Locations for CCDS 6145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 48724742 48724801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48729042 48729146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48729720 48729871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48730540 48730644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48731348 48731503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 48735094 48735151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGAACCGCAAGAAACTGCAGAAGCTGACGGACACCTTAACCAAAAATTGCAAGCATTTTAATAAATTTG
AAGTGAACTGTCTTATAAAGCTTTTTTATGACTTGGTGGGAGGAGTAGAGAGGCAAGGTCTGGTTGTTGG
ACTGGATCGTAATGCATTTCGAAACATCCTGCATGTGACATTTGGAATGACAGATGACATGATTATGGAC
AGAGTATTCCGAGGTTTTGATAAAGATAATGATGGCTGTGTAAATGTATTGGAGTGGATTCATGGATTAT
CACTGTTTCTTCGAGGATCTTTGGAAGAAAAAATGAAATATTGCTTTGAAGTGTTTGATTTGAATGGTGA
CGGATTCATTTCAAAGGAGGAAATGTTTCACATGTTGAAGAACAGCCTTCTCAAACAGCCATCTGAGGAA
GACCCTGATGAAGGAATTAAAGATTTGGTTGAAATAACACTGAAGAAAATGGATCATGACCATGATGGGA
AGCTGTCTTTTGCAGACTATGAACTGGCTGTGAGAGAAGAGACTCTTCTACTGGAGGCCTTTGGGCCATG
TCTTCCTGATCCAAAGAGCCAGATGGAATTTGAAGCTCAAGTATTCAAAGATCCAAATGAATTCAATGAT
ATGTGA

Translation (211 aa):
MNRKKLQKLTDTLTKNCKHFNKFEVNCLIKLFYDLVGGVERQGLVVGLDRNAFRNILHVTFGMTDDMIMD
RVFRGFDKDNDGCVNVLEWIHGLSLFLRGSLEEKMKYCFEVFDLNGDGFISKEEMFHMLKNSLLKQPSEE
DPDEGIKDLVEITLKKMDHDHDGKLSFADYELAVREETLLLEAFGPCLPDPKSQMEFEAQVFKDPNEFND
M


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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