NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8873.1 Public Homo sapiens 12 HOXC4 24 110 108 CCDS HistoryNCBI Gene:3221Re-query CCDS DB by CCDS ID:8873.1Re-query CCDS DB by GeneID:3221See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8873.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303406.4 ENSP00000305973.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303406.4Link to Ensembl Protein Viewer:ENSP00000305973.4Re-query CCDS DB by Nucleotide ID:ENST00000303406Re-query CCDS DB by Protein ID:ENSP00000305973
Original member Current member EBI ENST00000430889.3 ENSP00000399808.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000430889.3Link to Ensembl Protein Viewer:ENSP00000399808.2Re-query CCDS DB by Nucleotide ID:ENST00000430889Re-query CCDS DB by Protein ID:ENSP00000399808
Original member Current member NCBI NM_014620.6 NP_055435.2 Accepted alive Link to Nucleotide Sequence:NM_014620.6Link to Protein Sequence:NP_055435.2Re-query CCDS DB by Nucleotide ID:NM_014620Re-query CCDS DB by Protein ID:NP_055435Link to BLAST:NP_055435.2
Original member Current member NCBI NM_153633.3 NP_705897.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153633.3Link to Protein Sequence:NP_705897.1Re-query CCDS DB by Nucleotide ID:NM_153633Re-query CCDS DB by Protein ID:NP_705897Link to BLAST:NP_705897.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055435.2 264 P09017 264 100% 0 0
NP_705897.1 264 P09017 264 100% 0 0

Chromosomal Locations for CCDS 8873.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54053923 54054361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54054850 54055205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGATCATGAGCTCGTATTTGATGGACTCTAACTACATCGATCCGAAATTTCCTCCATGCGAAGAATATT
CGCAAAATAGCTACATCCCTGAACACAGTCCGGAATATTACGGCCGGACCAGGGAATCGGGATTCCAGCA
TCACCACCAGGAGCTGTACCCACCACCGCCTCCGCGCCCTAGCTACCCTGAGCGCCAGTATAGCTGCACC
AGTCTCCAGGGGCCCGGCAATTCGCGAGGCCACGGGCCGGCCCAGGCGGGCCACCACCACCCCGAGAAAT
CACAGTCGCTCTGCGAGCCGGCGCCTCTCTCAGGCGCCTCCGCCTCCCCGTCCCCAGCCCCGCCAGCCTG
CAGCCAGCCAGCCCCCGACCATCCCTCCAGCGCCGCCAGCAAGCAACCCATAGTCTACCCATGGATGAAA
AAAATTCACGTTAGCACGGTGAACCCCAATTATAACGGAGGGGAACCCAAGCGCTCGAGGACAGCCTATA
CCCGGCAGCAAGTCCTGGAATTAGAGAAAGAGTTTCATTACAACCGCTACCTGACCCGAAGGAGAAGGAT
CGAGATCGCCCACTCGCTGTGCCTCTCTGAGAGGCAGATCAAAATCTGGTTCCAAAACCGTCGCATGAAA
TGGAAGAAGGACCACCGACTCCCCAACACCAAAGTCAGGTCAGCACCCCCGGCCGGCGCTGCGCCCAGCA
CCCTTTCGGCAGCTACCCCGGGTACTTCTGAAGACCACTCCCAGAGCGCCACGCCGCCGGAGCAGCAACG
GGCAGAGGACATTACCAGGTTATAA

Translation (264 aa):
MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCT
SLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMK
KIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK
WKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH