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Report for CCDS8737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8737.1 Public Homo sapiens 12 CNTN1 24 110 108 CCDS HistoryNCBI Gene:1272Re-query CCDS DB by CCDS ID:8737.1Re-query CCDS DB by GeneID:1272See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8737.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347616.5 ENSP00000325660.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347616.5Link to Ensembl Protein Viewer:ENSP00000325660.3Re-query CCDS DB by Nucleotide ID:ENST00000347616Re-query CCDS DB by Protein ID:ENSP00000325660
Original member Current member EBI ENST00000551295.7 ENSP00000447006.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000551295.7Link to Ensembl Protein Viewer:ENSP00000447006.1Re-query CCDS DB by Nucleotide ID:ENST00000551295Re-query CCDS DB by Protein ID:ENSP00000447006
Original member Current member NCBI NM_001843.4 NP_001834.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001843.4Link to Protein Sequence:NP_001834.2Re-query CCDS DB by Nucleotide ID:NM_001843Re-query CCDS DB by Protein ID:NP_001834Link to BLAST:NP_001834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001834.2 1018 Q12860-1 1018 100% 0 0

Chromosomal Locations for CCDS 8737.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 40908433 40908493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40910073 40910105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40918639 40918771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40922256 40922428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40924557 40924652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40929796 40930002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40933461 40933560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40933697 40933878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40936781 40936905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40937570 40937687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40939335 40939485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40943597 40943724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40943995 40944170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40959114 40959234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40980909 40981067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40993120 40993269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41014228 41014298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41016682 41016916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41020337 41020440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41025150 41025336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41027857 41027969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41029063 41029219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41069959 41070035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3057 nt):
ATGAAAATGTGGTTGCTGGTCAGTCATCTTGTGATAATATCTATTACTACCTGTTTAGCAGAGTTTACAT
GGTATAGAAGATATGGTCATGGAGTTTCTGAGGAAGACAAAGGATTTGGACCAATTTTTGAAGAGCAGCC
AATCAATACCATTTATCCAGAGGAATCACTGGAAGGAAAAGTCTCACTCAACTGTAGGGCACGAGCCAGC
CCTTTCCCGGTTTACAAATGGAGAATGAATAATGGGGACGTTGATCTCACAAGTGATCGATACAGTATGG
TAGGAGGAAACCTTGTTATCAACAACCCTGACAAACAGAAAGATGCTGGAATATACTACTGTTTAGCATC
TAATAACTACGGGATGGTCAGAAGCACTGAAGCAACCCTGAGCTTTGGATATCTTGATCCTTTCCCACCT
GAGGAACGTCCTGAGGTCAGAGTAAAAGAAGGGAAAGGAATGGTGCTTCTCTGTGACCCCCCATACCATT
TTCCAGATGATCTTAGCTATCGCTGGCTTCTAAATGAATTTCCTGTATTTATCACAATGGATAAACGGCG
ATTTGTGTCTCAGACAAATGGCAATCTCTACATTGCAAATGTTGAGGCTTCCGACAAAGGCAATTATTCC
TGCTTTGTTTCCAGTCCTTCTATTACAAAGAGCGTGTTCAGCAAATTCATCCCACTCATTCCAATACCTG
AACGAACAACAAAACCATATCCTGCTGATATTGTAGTTCAGTTCAAGGATGTATATGCATTGATGGGCCA
AAATGTGACCTTAGAATGTTTTGCACTTGGAAATCCTGTTCCGGATATCCGATGGCGGAAGGTTCTAGAA
CCAATGCCAAGCACTGCTGAGATTAGCACCTCTGGGGCTGTTCTTAAGATCTTCAATATTCAGCTAGAAG
ATGAAGGCATCTATGAATGTGAGGCTGAGAACATTAGAGGAAAGGATAAACATCAAGCAAGAATTTATGT
TCAAGCATTCCCTGAGTGGGTAGAACACATCAATGACACAGAGGTGGACATAGGCAGTGATCTCTACTGG
CCTTGTGTGGCCACAGGAAAGCCCATCCCTACAATCCGATGGTTGAAAAATGGATATGCGTATCATAAAG
GGGAATTAAGACTGTATGATGTGACTTTTGAAAATGCCGGAATGTATCAGTGCATAGCTGAAAACACATA
TGGAGCCATTTATGCAAATGCTGAGTTGAAGATCTTGGCGTTGGCTCCAACTTTTGAAATGAATCCTATG
AAGAAAAAGATCCTGGCTGCTAAAGGTGGAAGGGTGATAATTGAATGCAAACCTAAAGCTGCACCGAAAC
CAAAGTTTTCATGGAGTAAAGGGACAGAGTGGCTTGTCAATAGCAGCAGAATACTCATTTGGGAAGATGG
TAGCTTGGAAATCAACAACATTACAAGGAATGATGGAGGTATCTATACATGCTTTGCAGAAAATAACAGA
GGGAAAGCTAATAGCACTGGAACCCTTGTTATCACAGATCCTACGCGAATTATATTGGCCCCAATTAATG
CCGATATCACAGTTGGAGAAAACGCCACCATGCAGTGTGCTGCGTCCTTTGATCCTGCCTTGGATCTCAC
ATTTGTTTGGTCCTTCAATGGCTATGTGATCGATTTTAACAAAGAGAATATTCACTACCAGAGGAATTTT
ATGCTGGATTCCAATGGGGAATTACTAATCCGAAATGCGCAGCTGAAACATGCTGGAAGATACACATGCA
CTGCCCAGACAATTGTGGACAATTCTTCAGCTTCAGCTGACCTTGTAGTGAGAGGCCCTCCAGGCCCTCC
AGGTGGTCTGAGAATAGAAGACATTAGAGCCACTTCTGTGGCACTTACTTGGAGCCGTGGTTCAGACAAT
CATAGTCCTATTTCTAAATACACTATCCAGACCAAGACTATTCTTTCAGATGACTGGAAAGATGCAAAGA
CAGATCCCCCAATTATTGAAGGAAATATGGAGGCAGCAAGAGCAGTGGACTTAATCCCATGGATGGAGTA
TGAATTCCGCGTGGTAGCAACCAATACACTGGGTAGAGGAGAGCCCAGTATACCATCTAACAGAATTAAA
ACAGACGGTGCTGCACCAAATGTGGCTCCTTCAGATGTAGGAGGTGGAGGTGGAAGAAACAGAGAGCTGA
CCATAACATGGGCGCCTTTGTCAAGAGAATACCACTATGGCAACAATTTTGGTTACATAGTGGCATTTAA
GCCATTTGATGGAGAAGAATGGAAAAAAGTCACAGTTACTAATCCTGATACTGGCCGATATGTCCATAAA
GATGAAACCATGAGCCCTTCCACTGCATTTCAAGTTAAAGTCAAGGCCTTCAACAACAAAGGAGATGGAC
CTTACAGCCTAGTAGCAGTCATTAATTCAGCACAAGACGCTCCCAGTGAAGCCCCAACAGAAGTAGGTGT
AAAAGTCTTATCATCTTCTGAGATATCTGTTCATTGGGAACATGTTTTAGAAAAAATAGTGGAAAGCTAT
CAGATTCGGTATTGGGCTGCCCATGACAAAGAAGAAGCTGCAAACAGAGTTCAAGTCACCAGCCAAGAGT
ACTCGGCCAGGCTCGAGAACCTTCTGCCAGACACCCAGTATTTTATAGAAGTCGGGGCCTGCAATAGTGC
AGGGTGTGGACCTCCAAGTGACATGATTGAGGCTTTCACCAAGAAAGCACCTCCTAGCCAGCCTCCAAGG
ATCATCAGTTCAGTAAGGTCTGGTTCACGCTATATAATCACCTGGGATCATGTCGTTGCACTATCAAATG
AATCTACAGTGACGGGATATAAGGTACTCTACAGACCTGATGGCCAGCATGATGGCAAGCTGTATTCAAC
TCACAAACACTCCATAGAAGTCCCAATCCCCAGAGATGGAGAATACGTTGTGGAGGTTCGCGCGCACAGT
GATGGAGGAGATGGAGTGGTGTCTCAAGTCAAAATTTCAGGTGCACCCACCCTATCCCCAAGTCTTCTCG
GCTTACTGCTGCCTGCCTTTGGCATCCTTGTCTACTTGGAATTCTGA

Translation (1018 aa):
MKMWLLVSHLVIISITTCLAEFTWYRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGKVSLNCRARAS
PFPVYKWRMNNGDVDLTSDRYSMVGGNLVINNPDKQKDAGIYYCLASNNYGMVRSTEATLSFGYLDPFPP
EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYS
CFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLE
PMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYW
PCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENTYGAIYANAELKILALAPTFEMNPM
KKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNR
GKANSTGTLVITDPTRIILAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNF
MLDSNGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVALTWSRGSDN
HSPISKYTIQTKTILSDDWKDAKTDPPIIEGNMEAARAVDLIPWMEYEFRVVATNTLGRGEPSIPSNRIK
TDGAAPNVAPSDVGGGGGRNRELTITWAPLSREYHYGNNFGYIVAFKPFDGEEWKKVTVTNPDTGRYVHK
DETMSPSTAFQVKVKAFNNKGDGPYSLVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEKIVESY
QIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAPPSQPPR
IISSVRSGSRYIITWDHVVALSNESTVTGYKVLYRPDGQHDGKLYSTHKHSIEVPIPRDGEYVVEVRAHS
DGGDGVVSQVKISGAPTLSPSLLGLLLPAFGILVYLEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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