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Report for CCDS6273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6273.1 Public Homo sapiens 8 CPQ 24 110 108 CCDS HistoryNCBI Gene:10404Re-query CCDS DB by CCDS ID:6273.1Re-query CCDS DB by GeneID:10404See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6273.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220763.10 ENSP00000220763.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220763.10Link to Ensembl Protein Viewer:ENSP00000220763.5Re-query CCDS DB by Nucleotide ID:ENST00000220763Re-query CCDS DB by Protein ID:ENSP00000220763
Original member Current member NCBI NM_016134.4 NP_057218.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016134.4Link to Protein Sequence:NP_057218.1Re-query CCDS DB by Nucleotide ID:NM_016134Re-query CCDS DB by Protein ID:NP_057218Link to BLAST:NP_057218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057218.1 472 Q9Y646 472 100% 0 0

Chromosomal Locations for CCDS 6273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 96784898 96785330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96834973 96835180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96879798 96880005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 96965935 96966046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 97029403 97029494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 97066009 97066210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 97143020 97143183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGAAATTCCTTATCTTCGCATTTTTCGGTGGTGTTCACCTTTTATCCCTGTGCTCTGGGAAAGCTATAT
GCAAGAATGGCATCTCTAAGAGGACTTTTGAAGAAATAAAAGAAGAAATAGCCAGCTGTGGAGATGTTGC
TAAAGCAATCATCAACCTAGCTGTTTATGGTAAAGCCCAGAACAGATCCTATGAGCGATTGGCACTTCTG
GTTGATACTGTTGGACCCAGACTGAGTGGCTCCAAGAACCTAGAAAAAGCCATCCAAATTATGTACCAAA
ACCTGCAGCAAGATGGGCTGGAGAAAGTTCACCTGGAGCCAGTGAGAATACCCCACTGGGAGAGGGGAGA
AGAATCAGCTGTGATGCTGGAGCCAAGAATTCATAAGATAGCCATCCTGGGTCTTGGCAGCAGCATTGGG
ACTCCTCCAGAAGGCATTACAGCAGAAGTTCTGGTGGTGACCTCTTTCGATGAACTGCAGAGAAGGGCCT
CAGAAGCAAGAGGGAAGATTGTTGTTTATAACCAACCTTACATCAACTACTCAAGGACGGTGCAATACCG
AACGCAGGGGGCGGTGGAAGCTGCCAAGGTGGGGGCTTTGGCATCTCTCATTCGATCCGTGGCCTCCTTC
TCCATCTACAGTCCTCACACAGGTATTCAGGAATACCAGGATGGCGTGCCCAAGATTCCAACAGCCTGTA
TTACGGTGGAAGATGCAGAAATGATGTCAAGAATGGCTTCTCATGGGATCAAAATTGTCATTCAGCTAAA
GATGGGGGCAAAGACCTACCCAGATACTGATTCCTTCAACACTGTAGCAGAGATCACTGGGAGCAAATAT
CCAGAACAGGTTGTACTGGTCAGTGGACATCTGGACAGCTGGGATGTTGGGCAGGGTGCCATGGATGATG
GCGGTGGAGCCTTTATATCATGGGAAGCACTCTCACTTATTAAAGATCTTGGGCTGCGTCCAAAGAGGAC
TCTGCGGCTGGTGCTCTGGACTGCAGAAGAACAAGGTGGAGTTGGTGCCTTCCAGTATTATCAGTTACAC
AAGGTAAATATTTCCAACTACAGTCTGGTGATGGAGTCTGACGCAGGAACCTTCTTACCCACTGGGCTGC
AATTCACTGGCAGTGAAAAGGCCAGGGCCATCATGGAGGAGGTTATGAGCCTGCTGCAGCCCCTCAATAT
CACTCAGGTCCTGAGCCATGGAGAAGGGACAGACATCAACTTTTGGATCCAAGCTGGAGTGCCTGGAGCC
AGTCTACTTGATGACTTATACAAGTATTTCTTCTTCCATCACTCCCACGGAGACACCATGACTGTCATGG
ATCCAAAGCAGATGAATGTTGCTGCTGCTGTTTGGGCTGTTGTTTCTTATGTTGTTGCAGACATGGAAGA
AATGCTGCCTAGGTCCTAG

Translation (472 aa):
MKFLIFAFFGGVHLLSLCSGKAICKNGISKRTFEEIKEEIASCGDVAKAIINLAVYGKAQNRSYERLALL
VDTVGPRLSGSKNLEKAIQIMYQNLQQDGLEKVHLEPVRIPHWERGEESAVMLEPRIHKIAILGLGSSIG
TPPEGITAEVLVVTSFDELQRRASEARGKIVVYNQPYINYSRTVQYRTQGAVEAAKVGALASLIRSVASF
SIYSPHTGIQEYQDGVPKIPTACITVEDAEMMSRMASHGIKIVIQLKMGAKTYPDTDSFNTVAEITGSKY
PEQVVLVSGHLDSWDVGQGAMDDGGGAFISWEALSLIKDLGLRPKRTLRLVLWTAEEQGGVGAFQYYQLH
KVNISNYSLVMESDAGTFLPTGLQFTGSEKARAIMEEVMSLLQPLNITQVLSHGEGTDINFWIQAGVPGA
SLLDDLYKYFFFHHSHGDTMTVMDPKQMNVAAAVWAVVSYVVADMEEMLPRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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