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Report for CCDS3456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3456.1 Public Homo sapiens 4 SMIM14 24 110 108 CCDS HistoryNCBI Gene:201895Re-query CCDS DB by CCDS ID:3456.1Re-query CCDS DB by GeneID:201895See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295958.10 ENSP00000295958.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295958.10Link to Ensembl Protein Viewer:ENSP00000295958.4Re-query CCDS DB by Nucleotide ID:ENST00000295958Re-query CCDS DB by Protein ID:ENSP00000295958
Original member Current member NCBI NM_001317896.2 NP_001304825.1 Accepted alive Link to Nucleotide Sequence:NM_001317896.2Link to Protein Sequence:NP_001304825.1Re-query CCDS DB by Nucleotide ID:NM_001317896Re-query CCDS DB by Protein ID:NP_001304825Link to BLAST:NP_001304825.1
Original member Current member NCBI NM_001317897.2 NP_001304826.1 Accepted alive Link to Nucleotide Sequence:NM_001317897.2Link to Protein Sequence:NP_001304826.1Re-query CCDS DB by Nucleotide ID:NM_001317897Re-query CCDS DB by Protein ID:NP_001304826Link to BLAST:NP_001304826.1
Original member Current member NCBI NM_174921.3 NP_777581.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_174921.3Link to Protein Sequence:NP_777581.1Re-query CCDS DB by Nucleotide ID:NM_174921Re-query CCDS DB by Protein ID:NP_777581Link to BLAST:NP_777581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304825.1 99 Q96QK8 99 100% 0 0
NP_001304826.1 99 Q96QK8 99 100% 0 0
NP_777581.1 99 Q96QK8 99 100% 0 0

Chromosomal Locations for CCDS 3456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 39552126 39552158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39556428 39556570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39572415 39572463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39605071 39605145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGCAGAAGGTGGATTTGATCCCTGTGAATGTGTTTGCTCTCATGAACATGCAATGAGAAGACTGATCA
ATCTGTTACGGCAGTCCCAGTCCTACTGCACAGACACAGAGTGTCTTCAGGAATTACCGGGACCCTCTGG
TGATAATGGCATCAGTGTTACAATGATCTTGGTAGCCTGGATGGTTATTGCATTGATCTTGTTCTTACTG
AGACCTCCTAATCTAAGAGGATCCAGCCTACCTGGAAAGCCAACCAGTCCTCATAATGGACAAGATCCAC
CAGCTCCTCCTGTGGACTAA

Translation (99 aa):
MAEGGFDPCECVCSHEHAMRRLINLLRQSQSYCTDTECLQELPGPSGDNGISVTMILVAWMVIALILFLL
RPPNLRGSSLPGKPTSPHNGQDPPAPPVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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