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Report for CCDS12855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12855.1 Public Homo sapiens 19 ZNF611 24 110 108 CCDS HistoryNCBI Gene:81856Re-query CCDS DB by CCDS ID:12855.1Re-query CCDS DB by GeneID:81856See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12855.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319783.5 ENSP00000322427.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000319783.5Link to Ensembl Protein Viewer:ENSP00000322427.1Re-query CCDS DB by Nucleotide ID:ENST00000319783Re-query CCDS DB by Protein ID:ENSP00000322427
Original member Current member EBI ENST00000543227.5 ENSP00000437616.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543227.5Link to Ensembl Protein Viewer:ENSP00000437616.1Re-query CCDS DB by Nucleotide ID:ENST00000543227Re-query CCDS DB by Protein ID:ENSP00000437616
Original member Current member EBI ENST00000540744.5 ENSP00000439211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540744.5Link to Ensembl Protein Viewer:ENSP00000439211.1Re-query CCDS DB by Nucleotide ID:ENST00000540744Re-query CCDS DB by Protein ID:ENSP00000439211
Original member Current member EBI ENST00000652185.1 ENSP00000498713.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652185.1Link to Ensembl Protein Viewer:ENSP00000498713.1Re-query CCDS DB by Nucleotide ID:ENST00000652185Re-query CCDS DB by Protein ID:ENSP00000498713
Original member Current member NCBI NM_001161499.2 NP_001154971.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001161499.2Link to Protein Sequence:NP_001154971.1Re-query CCDS DB by Nucleotide ID:NM_001161499Re-query CCDS DB by Protein ID:NP_001154971Link to BLAST:NP_001154971.1
Original member Current member NCBI NM_001161500.2 NP_001154972.1 Accepted alive Link to Nucleotide Sequence:NM_001161500.2Link to Protein Sequence:NP_001154972.1Re-query CCDS DB by Nucleotide ID:NM_001161500Re-query CCDS DB by Protein ID:NP_001154972Link to BLAST:NP_001154972.1
Original member Current member NCBI NM_030972.3 NP_112234.3 Accepted alive Link to Nucleotide Sequence:NM_030972.3Link to Protein Sequence:NP_112234.3Re-query CCDS DB by Nucleotide ID:NM_030972Re-query CCDS DB by Protein ID:NP_112234Link to BLAST:NP_112234.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154971.1 705 Q8N823-1 705 100% 0 0
NP_001154972.1 705 Q8N823-1 705 100% 0 0
NP_112234.3 705 Q8N823-1 705 100% 0 0

Chromosomal Locations for CCDS 12855.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 52704937 52706864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52714015 52714141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 52715832 52715894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2118 nt):
ATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGGAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACGCT
TG
ACTTTCCGGGATGTGGCTATAGAATTCTCATTGGCAGAGTGGAAATGCCTGAACCCTTCACAGAGGGC
T
TTGTACAGGGAAGTGATGTTGGAGAACTACAGGAACCTGGAGGCTGTGGATATCTCTTCCAAATGCATG
ATG
AAGGAGGTCTTGTCAACAGGGCAAGGCAATACAGAAGTGATCCACACAGGGACATTGCAAAGACATG
AA
AGTCATCACATTGGAGATTTTTGCTTCCAGGAAATTGAGAAAGAAATTCATGACATTGAGTTTCAGTG
T
CAAGAAGATGAAAGAAATGGCCTTGAAGCACCCATGACAAAAATAAAAAAGTTGACTGGTAGCACAGAC
CAA
CATGATCACAGGCATGCTGGAAACAAGCCTATTAAAGATCAGCTTGGATCAAGCTTTTATTCACATC
TG
CCTGAACTCCACATATTTCAGATCAAAGGTGAAATTGGTAATCAACTTGAGAAGTCTACTAATGATGC
T
CCCTCAGTTTCAACATTCCAAAGAATTTCCTGTAGGCCCCAAACCCAGATTTCTAATAACTATGGGAAT
AAT
CCCCTGAATTCTTCATTACTCCCACAAAAACAGGAAGTACACATGAGAGAAAAATCTTTCCAATGTA
AT
AAGAGTGGCAAAGCCTTTAATTGTAGCTCACTCTTAAGGAAACACCAGATACCCCATTTAGGAGACAA
A
CAATATAAATGTGATGTATGTGGCAAGCTCTTTAATCACGAGCAATACCTTGCATGCCATGATAGATGT
CAC
ACTGTTGAGAAACCTTACAAGTGTAAAGAGTGTGGCAAGACCTTCAGTCAGGAGTCATCCCTTACCT
GC
CATCGTAGACTTCATACTGGAGTAAAACGTTACAATTGTAATGAGTGTGGCAAGATCTTTGGTCAAAA
T
TCAGCCCTTCTAATTGATAAGGCAATTGATACTGGAGAAAATCCTTACAAGTGTAATGAATGTGACAAG
GCT
TTTAATCAACAATCACAACTTTCACATCATAGAATTCATACTGGAGAGAAACCTTACAAATGTGAAG
AA
TGTGACAAAGTTTTCAGTCGGAAATCAACCATTGAGACACATAAGAGAATTCATACTGGAGAGAAACC
A
TACAGATGTAAGGTTTGTGACACAGCTTTCACGTGGCATTCACAGCTGGCTCGACATAGAAGAATTCAT
ACT
GCAAAGAAAACTTATAAATGTAATGAGTGTGGCAAGACCTTCAGTCACAAGTCATCCCTTGTATGCC
AT
CATAGACTTCATGGTGGAGAGAAATCTTACAAATGTAAGGTTTGTGACAAGGCTTTTGTGTGGAGTTC
A
CAACTGGCAAAACATACTAGAATTGACTGTGGAGAAAAACCTTACAAGTGTAATGAATGTGGGAAGACC
TTT
GGTCAAAATTCAGATCTTTTAATTCATAAGTCAATTCATACTGGGGAGCAACCTTACAAATGTGATG
AA
TGTGAAAAGGTTTTCAGTCGTAAATCAAGCCTTGAGACACATAAGATAGGTCATACTGGAGAGAAACC
A
TACAAATGTAAGGTTTGTGACAAGGCTTTTGCGTGTCATTCCTATCTGGCAAAACATACTAGAATTCAT
AGT
GGAGAGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGTCACAGGTCATACCTTGTATGCC
AT
CATAGAGTTCATAGTGGTGAGAAACCTTACAAGTGTAATGAGTGCAGCAAGACCTTCAGTCGCAGGTC
A
TCCCTTCATTGCCATCGTAGACTTCATAGTGGTGAGAAACCTTACAAGTGTAATGAGTGTGGCAATACC
TTC
CGTCACTGCTCATCCCTTATATACCATCGTAGACTTCATACTGGAGAGAAATCTTACAAATGTACAA
TT
TGTGACAAGGCTTTCGTGCGTAATTCACTCCTGTCAAGACATACCAGAATTCACACTGCAGAGAAACC
T
TACAAGTGTAATGAATGTGGGAAGGCTTTTAATCAACAATCACACCTTTCACGTCATCATAGAATTCAT
ACT
GGAGAGAAACCTTAG


Translation (705 aa):
MLREEAAQKRKGKEPGMALPQGRLTFRDVAIEFSLAEWKCLNPSQRALYREVMLENYRNLEAVDISSKCM
M
KEVLSTGQGNTEVIHTGTLQRHESHHIGDFCFQEIEKEIHDIEFQCQEDERNGLEAPMTKIKKLTGSTD
Q
HDHRHAGNKPIKDQLGSSFYSHLPELHIFQIKGEIGNQLEKSTNDAPSVSTFQRISCRPQTQISNNYGN
N
PLNSSLLPQKQEVHMREKSFQCNKSGKAFNCSSLLRKHQIPHLGDKQYKCDVCGKLFNHEQYLACHDRC
H
TVEKPYKCKECGKTFSQESSLTCHRRLHTGVKRYNCNECGKIFGQNSALLIDKAIDTGENPYKCNECDK
A
FNQQSQLSHHRIHTGEKPYKCEECDKVFSRKSTIETHKRIHTGEKPYRCKVCDTAFTWHSQLARHRRIH
T
AKKTYKCNECGKTFSHKSSLVCHHRLHGGEKSYKCKVCDKAFVWSSQLAKHTRIDCGEKPYKCNECGKT
F
GQNSDLLIHKSIHTGEQPYKCDECEKVFSRKSSLETHKIGHTGEKPYKCKVCDKAFACHSYLAKHTRIH
S
GEKPYKCNECSKTFSHRSYLVCHHRVHSGEKPYKCNECSKTFSRRSSLHCHRRLHSGEKPYKCNECGNT
F
RHCSSLIYHRRLHTGEKSYKCTICDKAFVRNSLLSRHTRIHTAEKPYKCNECGKAFNQQSHLSRHHRIH
T
GEKP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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