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Report for CCDS3344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3344.1 Public Homo sapiens 4 FGFRL1 24 110 108 CCDS HistoryNCBI Gene:53834Re-query CCDS DB by CCDS ID:3344.1Re-query CCDS DB by GeneID:53834See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3344.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264748.6 ENSP00000264748.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264748.6Link to Ensembl Protein Viewer:ENSP00000264748.6Re-query CCDS DB by Nucleotide ID:ENST00000264748Re-query CCDS DB by Protein ID:ENSP00000264748
Original member Current member EBI ENST00000398484.6 ENSP00000381498.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398484.6Link to Ensembl Protein Viewer:ENSP00000381498.2Re-query CCDS DB by Nucleotide ID:ENST00000398484Re-query CCDS DB by Protein ID:ENSP00000381498
Original member Current member EBI ENST00000504138.5 ENSP00000423091.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504138.5Link to Ensembl Protein Viewer:ENSP00000423091.1Re-query CCDS DB by Nucleotide ID:ENST00000504138Re-query CCDS DB by Protein ID:ENSP00000423091
Original member Current member EBI ENST00000510644.6 ENSP00000425025.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000510644.6Link to Ensembl Protein Viewer:ENSP00000425025.1Re-query CCDS DB by Nucleotide ID:ENST00000510644Re-query CCDS DB by Protein ID:ENSP00000425025
Original member Current member NCBI NM_001004356.3 NP_001004356.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004356.3Link to Protein Sequence:NP_001004356.1Re-query CCDS DB by Nucleotide ID:NM_001004356Re-query CCDS DB by Protein ID:NP_001004356Link to BLAST:NP_001004356.1
Original member Current member NCBI NM_001004358.1 NP_001004358.1 Accepted alive Link to Nucleotide Sequence:NM_001004358.1Link to Protein Sequence:NP_001004358.1Re-query CCDS DB by Nucleotide ID:NM_001004358Re-query CCDS DB by Protein ID:NP_001004358Link to BLAST:NP_001004358.1
Original member Current member NCBI NM_001370296.1 NP_001357225.1 Accepted alive Link to Nucleotide Sequence:NM_001370296.1Link to Protein Sequence:NP_001357225.1Re-query CCDS DB by Nucleotide ID:NM_001370296Re-query CCDS DB by Protein ID:NP_001357225Link to BLAST:NP_001357225.1
Original member Current member NCBI NM_021923.3 NP_068742.2 Accepted alive Link to Nucleotide Sequence:NM_021923.3Link to Protein Sequence:NP_068742.2Re-query CCDS DB by Nucleotide ID:NM_021923Re-query CCDS DB by Protein ID:NP_068742Link to BLAST:NP_068742.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004356.1 504 Q8N441 504 100% 0 0
NP_001004358.1 504 Q8N441 504 100% 0 0
NP_001357225.1 504 Q8N441 504 100% 0 0
NP_068742.2 504 Q8N441 504 100% 0 0

Chromosomal Locations for CCDS 3344.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 1012486 1012564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1022203 1022475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1023641 1023721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1023817 1024101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1024311 1024664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1024905 1025347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGACGCCGAGCCCCCTGTTGCTGCTCCTGCTGCCGCCGCTGCTGCTGGGGGCCTTCCCGCCGGCCGCCG
CCGCCCGAGGCCCCCCAAAGATGGCGGACAAGGTGGTCCCACGGCAGGTGGCCCGGCTGGGCCGCACTGT
GCGGCTGCAGTGCCCAGTGGAGGGGGACCCGCCGCCGCTGACCATGTGGACCAAGGATGGCCGCACCATC
CACAGCGGCTGGAGCCGCTTCCGCGTGCTGCCGCAGGGGCTGAAGGTGAAGCAGGTGGAGCGGGAGGATG
CCGGCGTGTACGTGTGCAAGGCCACCAACGGCTTCGGCAGCCTGAGCGTCAACTACACCCTCGTCGTGCT
GGATGACATTAGCCCAGGGAAGGAGAGCCTGGGGCCCGACAGCTCCTCTGGGGGTCAAGAGGACCCCGCC
AGCCAGCAGTGGGCACGACCGCGCTTCACACAGCCCTCCAAGATGAGGCGCCGGGTGATCGCACGGCCCG
TGGGTAGCTCCGTGCGGCTCAAGTGCGTGGCCAGCGGGCACCCTCGGCCCGACATCACGTGGATGAAGGA
CGACCAGGCCTTGACGCGCCCAGAGGCCGCTGAGCCCAGGAAGAAGAAGTGGACACTGAGCCTGAAGAAC
CTGCGGCCGGAGGACAGCGGCAAATACACCTGCCGCGTGTCGAACCGCGCGGGCGCCATCAACGCCACCT
ACAAGGTGGATGTGATCCAGCGGACCCGTTCCAAGCCCGTGCTCACAGGCACGCACCCCGTGAACACGAC
GGTGGACTTCGGGGGGACCACGTCCTTCCAGTGCAAGGTGCGCAGCGACGTGAAGCCGGTGATCCAGTGG
CTGAAGCGCGTGGAGTACGGCGCCGAGGGCCGCCACAACTCCACCATCGATGTGGGCGGCCAGAAGTTTG
TGGTGCTGCCCACGGGTGACGTGTGGTCGCGGCCCGACGGCTCCTACCTCAATAAGCTGCTCATCACCCG
TGCCCGCCAGGACGATGCGGGCATGTACATCTGCCTTGGCGCCAACACCATGGGCTACAGCTTCCGCAGC
GCCTTCCTCACCGTGCTGCCAGACCCAAAACCGCCAGGGCCACCTGTGGCCTCCTCGTCCTCGGCCACTA
GCCTGCCGTGGCCCGTGGTCATCGGCATCCCAGCCGGCGCTGTCTTCATCCTGGGCACCCTGCTCCTGTG
GCTTTGCCAGGCCCAGAAGAAGCCGTGCACCCCCGCGCCTGCCCCTCCCCTGCCTGGGCACCGCCCGCCG
GGGACGGCCCGCGACCGCAGCGGAGACAAGGACCTTCCCTCGTTGGCCGCCCTCAGCGCTGGCCCTGGTG
TGGGGCTGTGTGAGGAGCATGGGTCTCCGGCAGCCCCCCAGCACTTACTGGGCCCAGGCCCAGTTGCTGG
CCCTAAGTTGTACCCCAAACTCTACACAGACATCCACACACACACACACACACACTCTCACACACACTCA
CACGTGGAGGGCAAGGTCCACCAGCACATCCACTATCAGTGCTAG

Translation (504 aa):
MTPSPLLLLLLPPLLLGAFPPAAAARGPPKMADKVVPRQVARLGRTVRLQCPVEGDPPPLTMWTKDGRTI
HSGWSRFRVLPQGLKVKQVEREDAGVYVCKATNGFGSLSVNYTLVVLDDISPGKESLGPDSSSGGQEDPA
SQQWARPRFTQPSKMRRRVIARPVGSSVRLKCVASGHPRPDITWMKDDQALTRPEAAEPRKKKWTLSLKN
LRPEDSGKYTCRVSNRAGAINATYKVDVIQRTRSKPVLTGTHPVNTTVDFGGTTSFQCKVRSDVKPVIQW
LKRVEYGAEGRHNSTIDVGGQKFVVLPTGDVWSRPDGSYLNKLLITRARQDDAGMYICLGANTMGYSFRS
AFLTVLPDPKPPGPPVASSSSATSLPWPVVIGIPAGAVFILGTLLLWLCQAQKKPCTPAPAPPLPGHRPP
GTARDRSGDKDLPSLAALSAGPGVGLCEEHGSPAAPQHLLGPGPVAGPKLYPKLYTDIHTHTHTHSHTHS
HVEGKVHQHIHYQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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