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Report for CCDS514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
514.1 Public Homo sapiens 1 BEST4 24 110 108 CCDS HistoryNCBI Gene:266675Re-query CCDS DB by CCDS ID:514.1Re-query CCDS DB by GeneID:266675See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 514.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372207.4 ENSP00000361281.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372207.4Link to Ensembl Protein Viewer:ENSP00000361281.3Re-query CCDS DB by Nucleotide ID:ENST00000372207Re-query CCDS DB by Protein ID:ENSP00000361281
Original member Current member NCBI NM_153274.3 NP_695006.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153274.3Link to Protein Sequence:NP_695006.1Re-query CCDS DB by Nucleotide ID:NM_153274Re-query CCDS DB by Protein ID:NP_695006Link to BLAST:NP_695006.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_695006.1 473 Q8NFU0 473 100% 0 0

Chromosomal Locations for CCDS 514.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44784210 44784483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44784629 44784783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44784905 44784985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44785108 44785305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44785599 44785676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44786074 44786228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44786463 44786696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44787372 44787466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44787554 44787705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGACGGTTTCATACACTCTCAAAGTGGCGGAGGCCCGCTTCGGAGGTTTCTCTGGCCTGCTTCTCCGCT
GGAGGGGAAGCATCTACAAGCTCCTCTACAAGGAATTCCTCCTCTTTGGGGCCTTGTACGCTGTGCTTAG
CATCACCTACCGGCTGCTGCTGACCCAGGAGCAGAGGTACGTGTATGCTCAGGTGGCCCGGTACTGCAAC
CGCTCAGCAGACCTCATTCCCTTGTCCTTTGTATTGGGTTTCTATGTGACTCTCGTGGTGAACCGCTGGT
GGTCCCAGTACACAAGCATCCCGCTGCCAGACCAGCTGATGTGCGTCATCTCGGCTAGCGTGCACGGCGT
GGACCAGCGGGGCCGCCTGCTGCGCCGCACCCTCATCCGCTACGCGAACCTGGCGTCCGTGCTGGTGCTG
CGCTCGGTCAGCACCCGCGTGCTTAAGCGCTTCCCCACCATGGAGCACGTGGTGGACGCAGGTTTCATGT
CCCAGGAAGAGAGGAAAAAGTTTGAGAGCCTGAAATCCGACTTCAACAAGTACTGGGTCCCCTGCGTCTG
GTTCACCAACCTGGCGGCCCAGGCCCGGAGGGACGGGCGAATACGTGACGATATCGCTCTCTGTCTACTT
TTGGAAGAGCTGAACAAGTACCGAGCCAAGTGCAGCATGCTATTCCACTATGACTGGATCAGCATCCCCC
TCGTCTACACCCAAGTGGTGACCATAGCCGTCTACTCTTTCTTTGCCCTCTCCCTGGTTGGCCGCCAGTT
TGTGGAGCCAGAGGCAGGGGCTGCCAAACCTCAGAAGCTTCTGAAGCCAGGCCAGGAGCCAGCCCCAGCC
CTGGGAGACCCGGACATGTACGTGCCTCTCACCACTCTGCTGCAGTTCTTCTTCTATGCTGGCTGGCTCA
AGGTGGCTGAACAGATCATCAACCCATTTGGTGAGGATGATGACGACTTTGAGACAAATCAGCTCATAGA
CCGCAACTTGCAGGTGTCCCTGCTATCCGTGGACGAAATGTACCAGAACCTTCCCCCCGCTGAGAAGGAC
CAGTACTGGGATGAGGACCAGCCGCAGCCACCCTACACTGTGGCCACGGCGGCCGAGTCTCTGCGGCCCT
CATTCCTGGGCTCCACCTTCAACCTGCGCATGAGCGACGACCCTGAGCAGAGCCTGCAGGTGGAGGCGTC
CCCCGGATCTGGTCGGCCCGCGCCCGCCGCGCAGACCCCGTTGCTCGGCCGCTTCCTGGGCGTAGGGGCG
CCCTCCCCGGCCATCAGCCTCCGGAACTTCGGCCGCGTGCGAGGCACCCCCCGCCCCCCGCATCTGCTGC
GCTTCCGGGCGGAGGAGGGCGGCGACCCCGAGGCCGCAGCCCGCATCGAGGAGGAATCGGCGGAGTCCGG
GGACGAGGCCCTGGAGCCCTGA

Translation (473 aa):
MTVSYTLKVAEARFGGFSGLLLRWRGSIYKLLYKEFLLFGALYAVLSITYRLLLTQEQRYVYAQVARYCN
RSADLIPLSFVLGFYVTLVVNRWWSQYTSIPLPDQLMCVISASVHGVDQRGRLLRRTLIRYANLASVLVL
RSVSTRVLKRFPTMEHVVDAGFMSQEERKKFESLKSDFNKYWVPCVWFTNLAAQARRDGRIRDDIALCLL
LEELNKYRAKCSMLFHYDWISIPLVYTQVVTIAVYSFFALSLVGRQFVEPEAGAAKPQKLLKPGQEPAPA
LGDPDMYVPLTTLLQFFFYAGWLKVAEQIINPFGEDDDDFETNQLIDRNLQVSLLSVDEMYQNLPPAEKD
QYWDEDQPQPPYTVATAAESLRPSFLGSTFNLRMSDDPEQSLQVEASPGSGRPAPAAQTPLLGRFLGVGA
PSPAISLRNFGRVRGTPRPPHLLRFRAEEGGDPEAAARIEEESAESGDEALEP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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