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Report for CCDS35081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35081.1 Public Homo sapiens 9 COL15A1 24 110 108 CCDS HistoryNCBI Gene:1306Re-query CCDS DB by CCDS ID:35081.1Re-query CCDS DB by GeneID:1306See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375001.8 ENSP00000364140.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375001.8Link to Ensembl Protein Viewer:ENSP00000364140.3Re-query CCDS DB by Nucleotide ID:ENST00000375001Re-query CCDS DB by Protein ID:ENSP00000364140
Original member Current member NCBI NM_001855.5 NP_001846.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001855.5Link to Protein Sequence:NP_001846.3Re-query CCDS DB by Nucleotide ID:NM_001855Re-query CCDS DB by Protein ID:NP_001846Link to BLAST:NP_001846.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001846.3 1388 P39059 1388 100% 0 0

Chromosomal Locations for CCDS 35081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 98944062 98944072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98944162 98944250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98985565 98986112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98987294 98987368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98989178 98989258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 98996934 98997081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99000839 99000951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99003453 99003587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99004898 99005050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99015417 99015566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99015976 99016119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99020389 99020442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99022091 99022150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99023357 99023449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99024874 99024999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99025904 99025966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99034549 99034584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99035014 99035154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99035350 99035418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99036170 99036205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99036313 99036396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99038668 99038733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99040521 99040556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99042045 99042107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99044568 99044636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99044735 99044770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99047786 99047839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99047941 99048000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99049690 99049758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99049854 99049895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99052388 99052433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99054576 99054656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99055102 99055151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99055262 99055372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99056260 99056404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99059889 99059953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99061971 99062099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99062245 99062304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99063050 99063109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99066882 99067067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99068555 99068670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99069673 99069886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4167 nt):
ATGGCACCAAGGAGGAACAACGGGCAGTGCTGGTGTCTGCTGATGCTGCTCTCGGTCTCCACGCCCCTCC
CTGCTGTCACCCAGACCCGCGGTGCGACAGAGACTGCTTCCCAGGGTCACCTGGACCTCACGCAGCTCAT
CGGTGTCCCGCTGCCCTCGTCCGTATCCTTTGTCACAGGCTATGGTGGCTTCCCGGCCTACAGTTTCGGG
CCTGGTGCCAATGTTGGCCGCCCAGCCAGGACTCTCATCCCATCCACCTTCTTCAGGGACTTCGCCATCA
GCGTCGTGGTGAAGCCCAGCAGCACCCGTGGTGGCGTGCTCTTCGCCATCACTGACGCCTTCCAGAAGGT
CATCTACCTGGGCCTGCGGCTCTCAGGTGTGGAGGACGGCCACCAGCGGATCATCCTCTACTACACGGAG
CCAGGCTCCCATGTGTCCCAAGAGGCTGCTGCCTTCTCGGTGCCTGTGATGACCCACAGGTGGAACCGCT
TCGCCATGATTGTCCAGGGTGAGGAAGTGACCCTCCTCGTGAACTGTGAGGAGCACAGCCGCATCCCCTT
CCAGCGGTCCTCCCAGGCTTTGGCTTTTGAGTCCAGCGCTGGAATCTTCATGGGCAATGCAGGAGCTACA
GGGCTCGAGAGATTCACTGGCTCCCTCCAGCAGCTCACCGTGCACCCCGACCCCAGGACTCCCGAGGAGC
TGTGTGACCCTGAAGAGTCCTCGGCATCTGGAGAGACCAGTGGGCTGCAGGAGGCAGACGGAGTAGCTGA
GATCTTAGAAGCCGTCACCTACACTCAAGCCTCGCCCAAAGAAGCAAAAGTTGAACCCATAAACACACCT
CCAACTCCATCCTCCCCCTTTGAAGACATGGAACTTTCTGGTGAACCTGTACCCGAGGGGACCCTGGAAA
CCACCAACATGAGCATCATCCAGCACAGCAGCCCCAAACAAGGGTCTGGTGAGATCCTGAATGACACACT
GGAGGGGGTTCATTCTGTGGATGGTGACCCCATTACTGACAGCGGCTCAGGGGCTGGGGCCTTCCTTGAC
ATTGCTGAAGAAAAGAATTTAGCAGCAACAGCAGCGGGGCTGGCCGAGGTGCCCATCAGCACTGCTGGAG
AAGCAGAGGCCAGCAGTGTGCCCACCGGGGGACCAACCCTCTCTATGTCCACGGAGAACCCAGAGGAAGG
GGTCACTCCAGGTCCAGATAATGAAGAGCGTTTAGCAGCAACAGCAGCAGGGGAGGCCGAGGCACTCGCC
AGCATGCCTGGGGAAGTGGAGGCCAGTGGTGTGGCCCCCGGGGAGCTGGACCTCTCCATGTCCGCCCAGA
GCCTCGGGGAAGAGGCCACTGTGGGTCCAAGCAGTGAAGACAGTTTAACAACAGCTGCAGCTGCAACCGA
AGTGTCCCTCAGTACTTTTGAGGATGAGGAAGCCAGTGGGGTCCCCACAGATGGCCTGGCTCCCCTCACA
GCCACCATGGCCCCTGAGCGGGCAGTCACTTCTGGTCCTGGTGATGAAGAAGACTTGGCAGCAGCCACAA
CAGAGGAGCCCCTCATCACAGCTGGGGGTGAAGAGTCCGGCAGCCCTCCCCCTGATGGGCCACCGCTGCC
CCTGCCCACAGTGGCTCCTGAAAGATGGATCACTCCAGCTCAAAGAGAACATGTGGGAATGAAAGGACAG
GCTGGGCCCAAAGGAGAAAAGGGTGATGCTGGGGAGGAGCTTCCTGGCCCTCCTGAACCTTCTGGGCCTG
TTGGACCCACGGCAGGAGCAGAAGCAGAGGGCTCTGGCCTAGGCTGGGGCTCGGACGTCGGCTCTGGCTC
TGGTGACCTGGTGGGCAGTGAGCAGCTGCTGAGAGGTCCTCCAGGACCCCCAGGGCCACCTGGCTTACCT
GGGATTCCAGGAAAACCAGGAACTGATGTTTTCATGGGACCCCCTGGATCTCCTGGAGAGGATGGACCTG
CTGGTGAACCTGGGCCCCCGGGCCCTGAGGGACAGCCTGGAGTTGATGGAGCCACCGGCCTTCCCGGGAT
GAAAGGGGAGAAGGGAGCAAGAGGGCCTAATGGCTCAGTTGGTGAAAAGGGTGACCCTGGCAACAGAGGC
TTACCTGGACCCCCGGGGAAAAAGGGACAAGCTGGCCCTCCTGGGGTCATGGGACCCCCAGGGCCTCCTG
GACCCCCTGGGCCCCCAGGCCCTGGATGCACAATGGGACTTGGATTCGAGGATACCGAAGGCTCTGGAAG
CACCCAGCTATTGAATGAACCCAAACTCTCCAGACCAACGGCTGCAATTGGTCTCAAAGGAGAGAAAGGA
GACCGGGGACCCAAGGGAGAAAGGGGGATGGATGGAGCCAGTATTGTGGGACCCCCTGGGCCGAGAGGGC
CACCTGGGCACATCAAGGTCTTGTCTAATTCCTTGATCAATATCACCCATGGATTCATGAATTTCTCGGA
CATTCCTGAGCTGGTGGGGCCTCCGGGGCCGGACGGGTTGCCTGGGCTGCCAGGATTTCCAGGTCCTAGA
GGACCAAAAGGTGACACTGGTTTACCTGGCTTTCCAGGACTAAAAGGAGAACAGGGCGAGAAGGGAGAGC
CGGGTGCCATCCTGACAGAGGACATTCCTCTGGAAAGGCTGATGGGGAAAAAGGGTGAACCTGGAATGCA
TGGAGCCCCAGGACCAATGGGGCCCAAAGGACCACCAGGACATAAAGGAGAATTTGGCCTTCCCGGGCGA
CCTGGTCGCCCAGGACTGAATGGCCTCAAGGGTACCAAAGGAGATCCAGGGGTCATTATGCAGGGCCCAC
CTGGCTTACCTGGCCCTCCAGGCCCCCCTGGGCCACCTGGAGCTGTGATTAACATCAAAGGAGCCATTTT
CCCAATACCCGTCCGACCACACTGCAAAATGCCAGTTGATACTGCTCATCCTGGGAGTCCAGAGCTCATC
ACTTTTCACGGTGTTAAAGGAGAGAAAGGATCCTGGGGTCTTCCTGGCTCAAAGGGAGAAAAAGGCGACC
AGGGAGCCCAGGGACCACCAGGTCCTCCACTTGATCTAGCTTACCTGAGACACTTTCTGAACAACTTGAA
GGGGGAGAATGGAGACAAGGGGTTCAAAGGTGAAAAAGGAGAAAAAGGAGACATTAATGGCAGCTTCCTT
ATGTCTGGGCCTCCAGGCCTGCCCGGAAATCCAGGCCCGGCTGGCCAAAAAGGGGAGACAGTCGTTGGGC
CCCAAGGACCCCCAGGTGCTCCTGGTCTGCCTGGGCCACCTGGCTTTGGAAGACCTGGTGATCCTGGGCC
ACCGGGGCCCCCGGGGCCACCAGGACCTCCAGCTATCCTGGGAGCAGCTGTGGCCCTTCCAGGTCCCCCT
GGCCCTCCAGGACAGCCAGGGCTTCCCGGATCCAGAAACCTGGTCACAGCATTCAGCAACATGGATGACA
TGCTGCAGAAAGCGCATTTGGTTATAGAAGGAACATTCATCTACCTGAGGGACAGCACTGAGTTTTTCAT
TCGTGTTAGAGATGGCTGGAAAAAATTACAGCTGGGAGAACTGATCCCCATTCCTGCCGACAGCCCTCCA
CCCCCTGCGCTTTCCAGCAACCCACATCAGCTTCTGCCTCCACCAAACCCTATTTCAAGTGCCAATTATG
AGAAGCCTGCTCTGCATTTGGCTGCTCTGAACATGCCATTTTCTGGGGACATTCGAGCTGATTTTCAGTG
CTTCAAGCAGGCCAGAGCTGCAGGACTGTTGTCCACCTACCGAGCATTCTTATCTTCCCATTTGCAAGAT
CTGTCCACCATTGTGAGGAAAGCAGAGAGATACAGCCTTCCCATAGTGAACCTCAAGGGCCAAGTACTTT
TTAATAATTGGGACTCAATTTTTTCTGGCCACGGAGGTCAGTTCAATATGCATATTCCAATATACTCCTT
TGATGGTCGAGACATAATGACAGATCCTTCTTGGCCCCAGAAAGTCATTTGGCATGGCTCCAGCCCCCAT
GGCGTCCGCCTTGTGGATAACTACTGTGAAGCATGGCGAACCGCGGACACAGCGGTCACGGGACTTGCCT
CCCCGCTGAGCACGGGGAAGATTCTGGACCAGAAAGCATACAGCTGTGCTAATCGGCTAATTGTCCTATG
TATCGAAAACAGTTTCATGACAGACGCTAGGAAGTAA

Translation (1388 aa):
MAPRRNNGQCWCLLMLLSVSTPLPAVTQTRGATETASQGHLDLTQLIGVPLPSSVSFVTGYGGFPAYSFG
PGANVGRPARTLIPSTFFRDFAISVVVKPSSTRGGVLFAITDAFQKVIYLGLRLSGVEDGHQRIILYYTE
PGSHVSQEAAAFSVPVMTHRWNRFAMIVQGEEVTLLVNCEEHSRIPFQRSSQALAFESSAGIFMGNAGAT
GLERFTGSLQQLTVHPDPRTPEELCDPEESSASGETSGLQEADGVAEILEAVTYTQASPKEAKVEPINTP
PTPSSPFEDMELSGEPVPEGTLETTNMSIIQHSSPKQGSGEILNDTLEGVHSVDGDPITDSGSGAGAFLD
IAEEKNLAATAAGLAEVPISTAGEAEASSVPTGGPTLSMSTENPEEGVTPGPDNEERLAATAAGEAEALA
SMPGEVEASGVAPGELDLSMSAQSLGEEATVGPSSEDSLTTAAAATEVSLSTFEDEEASGVPTDGLAPLT
ATMAPERAVTSGPGDEEDLAAATTEEPLITAGGEESGSPPPDGPPLPLPTVAPERWITPAQREHVGMKGQ
AGPKGEKGDAGEELPGPPEPSGPVGPTAGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGPPGPPGLP
GIPGKPGTDVFMGPPGSPGEDGPAGEPGPPGPEGQPGVDGATGLPGMKGEKGARGPNGSVGEKGDPGNRG
LPGPPGKKGQAGPPGVMGPPGPPGPPGPPGPGCTMGLGFEDTEGSGSTQLLNEPKLSRPTAAIGLKGEKG
DRGPKGERGMDGASIVGPPGPRGPPGHIKVLSNSLINITHGFMNFSDIPELVGPPGPDGLPGLPGFPGPR
GPKGDTGLPGFPGLKGEQGEKGEPGAILTEDIPLERLMGKKGEPGMHGAPGPMGPKGPPGHKGEFGLPGR
PGRPGLNGLKGTKGDPGVIMQGPPGLPGPPGPPGPPGAVINIKGAIFPIPVRPHCKMPVDTAHPGSPELI
TFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNLKGENGDKGFKGEKGEKGDINGSFL
MSGPPGLPGNPGPAGQKGETVVGPQGPPGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAAVALPGPP
GPPGQPGLPGSRNLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIPADSPP
PPALSSNPHQLLPPPNPISSANYEKPALHLAALNMPFSGDIRADFQCFKQARAAGLLSTYRAFLSSHLQD
LSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNMHIPIYSFDGRDIMTDPSWPQKVIWHGSSPH
GVRLVDNYCEAWRTADTAVTGLASPLSTGKILDQKAYSCANRLIVLCIENSFMTDARK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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