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Report for CCDS3018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3018.1 Public Homo sapiens 3 SLC49A4 24 110 108 CCDS HistoryNCBI Gene:84925Re-query CCDS DB by CCDS ID:3018.1Re-query CCDS DB by GeneID:84925See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261038.6 ENSP00000261038.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261038.6Link to Ensembl Protein Viewer:ENSP00000261038.5Re-query CCDS DB by Nucleotide ID:ENST00000261038Re-query CCDS DB by Protein ID:ENSP00000261038
Original member Current member NCBI NM_032839.3 NP_116228.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032839.3Link to Protein Sequence:NP_116228.1Re-query CCDS DB by Nucleotide ID:NM_032839Re-query CCDS DB by Protein ID:NP_116228Link to BLAST:NP_116228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116228.1 478 Q96SL1-1 478 100% 0 0

Chromosomal Locations for CCDS 3018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122795193 122795535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122806857 122806950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122826800 122827065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122833317 122833446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122845763 122845871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122856307 122856374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122860075 122860202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122872415 122872597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122879263 122879378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGGCTCTCGCTGGAGCAGCGAAGAGGAGAGGCAGCCGCTGCTGGGGCCCGGGCTCGGGCCTGGGCTGG
GGGCCTCCTGGAGAAGCCGGGAGGCGGCGGCGGCGGCGCTGCCCGCGGCGGTCCCGGGTCCCGGGCGGGT
ATACGGGCGCCGCTGGCTGGTGCTGCTGCTCTTCTCGCTGCTGGCGTTCGTTCAGGGCCTGGTCTGGAAC
ACCTGGGGTCCCATCCAGAACTCGGCGCGCCAGGCCTACGGCTTCTCCAGCTGGGACATCGCGCTGCTCG
TGCTGTGGGGGCCCATCGGCTTCCTGCCCTGCTTCGCGTTCATGTGGCTCCTGGACAAGAGAGGTCTCCG
GATAACTGTGCTCCTGACATCCTTCCTTATGGTTTTGGGAACTGGTCTAAGATGCATACCTATATCAGAC
TTAATCCTTAAAAGAAGATTAATTCATGGAGGACAGATGTTAAATGGATTGGCAGGTCCAACTGTAATGA
ATGCAGCACCATTTCTCTCTACGACGTGGTTTTCTGCAGATGAAAGGGCCACAGCCACAGCTATTGCATC
AATGCTCAGTTATCTTGGGGGAGCATGTGCATTTTTAGTTGGACCACTTGTTGTTCCAGCTCCCAATGGG
ACATCACCTCTTCTTGCTGCAGAGAGCAGCAGGGCGCATATTAAAGATCGCATAGAGGCTGTGTTATATG
CAGAATTTGGAGTTGTCTGCTTAATATTTTCTGCAACACTAGCTTATTTCCCACCCCGACCTCCTCTTCC
TCCCAGTGTTGCTGCAGCTAGCCAGCGGCTGAGTTATCGGAGAAGCGTTTGTAGATTATTAAGCAATTTT
CGATTTTTGATGATTGCTTTAGCATATGCCATACCACTTGGTGTATTTGCTGGCTGGTCTGGAGTTCTGG
ACTTAATTTTAACACCAGCGCATGTCAGCCAAGTAGATGCTGGCTGGATTGGATTTTGGTCCATAGTTGG
AGGCTGTGTTGTTGGAATAGCTATGGCAAGGTTTGCAGATTTTATCAGGGGTATGCTGAAACTAATTCTT
CTCCTCCTGTTTTCGGGAGCTACACTGTCATCCACGTGGTTCACCCTGACCTGTTTGAACAGCATCACAC
ACCTACCTTTAACCACAGTGACATTGTATGCCTCCTGTATTCTCCTGGGAGTGTTCTTGAATAGCAGCGT
GCCTATATTTTTTGAGCTTTTTGTGGAAACTGTCTACCCAGTTCCAGAAGGAATTACTTGTGGAGTTGTC
ACTTTTTTAAGTAATATGTTTATGGGAGTACTTTTATTTTTTCTCACATTTTATCATACAGAGTTGTCTT
GGTTCAACTGGTGCCTTCCCGGGTCGTGTTTGCTCAGTCTCCTCCTCATTCTGTGCTTCAGGGAATCCTA
TGACAGACTCTATCTTGATGTGGTTGTCTCCGTTTAA

Translation (478 aa):
MGSRWSSEEERQPLLGPGLGPGLGASWRSREAAAAALPAAVPGPGRVYGRRWLVLLLFSLLAFVQGLVWN
TWGPIQNSARQAYGFSSWDIALLVLWGPIGFLPCFAFMWLLDKRGLRITVLLTSFLMVLGTGLRCIPISD
LILKRRLIHGGQMLNGLAGPTVMNAAPFLSTTWFSADERATATAIASMLSYLGGACAFLVGPLVVPAPNG
TSPLLAAESSRAHIKDRIEAVLYAEFGVVCLIFSATLAYFPPRPPLPPSVAAASQRLSYRRSVCRLLSNF
RFLMIALAYAIPLGVFAGWSGVLDLILTPAHVSQVDAGWIGFWSIVGGCVVGIAMARFADFIRGMLKLIL
LLLFSGATLSSTWFTLTCLNSITHLPLTTVTLYASCILLGVFLNSSVPIFFELFVETVYPVPEGITCGVV
TFLSNMFMGVLLFFLTFYHTELSWFNWCLPGSCLLSLLLILCFRESYDRLYLDVVVSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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