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Report for CCDS5889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5889.1 Public Homo sapiens 7 CNTNAP2 24 110 108 CCDS HistoryNCBI Gene:26047Re-query CCDS DB by CCDS ID:5889.1Re-query CCDS DB by GeneID:26047See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5889.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361727.8 ENSP00000354778.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361727.8Link to Ensembl Protein Viewer:ENSP00000354778.3Re-query CCDS DB by Nucleotide ID:ENST00000361727Re-query CCDS DB by Protein ID:ENSP00000354778
Original member Current member NCBI NM_014141.6 NP_054860.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014141.6Link to Protein Sequence:NP_054860.1Re-query CCDS DB by Nucleotide ID:NM_014141Re-query CCDS DB by Protein ID:NP_054860Link to BLAST:NP_054860.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054860.1 1331 Q9UHC6-1 1331 100% 0 0

Chromosomal Locations for CCDS 5889.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 146116877 146116973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 146774271 146774381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 146839711 146839904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147043907 147044054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147108147 147108350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147120979 147121163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147128693 147128836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147132245 147132509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147300141 147300290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147395609 147395780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147485935 147486041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147562138 147562257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147639106 147639306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147903565 147903721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 147977862 147977989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148118118 148118288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148147491 148147709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148172242 148172478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148217288 148217524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148229646 148229779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148267033 148267126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148383649 148383888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148409391 148409471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 148415417 148415616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3996 nt):
ATGCAGGCGGCTCCGCGCGCCGGCTGCGGGGCAGCGCTCCTGCTGTGGATTGTCAGCAGCTGCCTCTGCA
GAGCCTGGACGGCTCCCTCCACGTCCCAAAAATGTGATGAGCCACTTGTCTCTGGACTCCCCCATGTGGC
TTTCAGCAGCTCCTCCTCCATCTCTGGTAGCTATTCTCCCGGCTATGCCAAGATAAACAAGAGAGGAGGT
GCTGGGGGATGGTCTCCATCAGACAGCGACCATTATCAATGGCTTCAGGTTGACTTTGGCAATCGGAAGC
AGATCAGTGCCATTGCAACCCAAGGAAGGTATAGCAGCTCAGATTGGGTGACCCAATACCGGATGCTCTA
CAGCGACACAGGGAGAAACTGGAAACCCTATCATCAAGATGGGAATATCTGGGCATTTCCCGGAAACATT
AACTCTGACGGTGTGGTCCGGCACGAATTACAGCATCCGATTATTGCCCGCTATGTGCGCATAGTGCCTC
TGGATTGGAATGGAGAAGGTCGCATTGGACTCAGAATTGAAGTTTATGGCTGTTCTTACTGGGCTGATGT
TATCAACTTTGATGGCCATGTTGTATTACCATATAGATTCAGAAACAAGAAGATGAAAACACTGAAAGAT
GTCATTGCCTTGAACTTTAAGACGTCTGAAAGTGAAGGAGTAATCCTGCACGGAGAAGGACAGCAAGGAG
ATTACATTACCTTGGAACTGAAAAAAGCCAAGCTGGTCCTCAGTTTAAACTTAGGAAGCAACCAGCTTGG
CCCCATATATGGCCACACATCAGTGATGACAGGAAGTTTGCTGGATGACCACCACTGGCACTCTGTGGTC
ATTGAGCGCCAGGGGCGGAGCATTAACCTCACTCTGGACAGGAGCATGCAGCACTTCCGTACCAATGGAG
AGTTTGACTACCTGGACTTGGACTATGAGATAACCTTTGGAGGCATCCCTTTCTCTGGCAAGCCCAGCTC
CAGCAGTAGAAAGAATTTCAAAGGCTGCATGGAAAGCATCAACTACAATGGCGTCAACATTACTGATCTT
GCCAGAAGGAAGAAATTAGAGCCCTCAAATGTGGGAAATTTGAGCTTTTCTTGTGTGGAACCCTATACGG
TGCCTGTCTTTTTCAACGCTACAAGTTACCTGGAGGTGCCCGGACGGCTTAACCAGGACCTGTTCTCAGT
CAGTTTCCAGTTTAGGACATGGAACCCCAATGGTCTCCTGGTCTTCAGTCACTTTGCGGATAATTTGGGC
AATGTGGAGATTGACCTCACTGAAAGCAAAGTGGGTGTTCACATCAACATCACACAGACCAAGATGAGCC
AAATCGATATTTCCTCAGGTTCTGGGTTGAATGATGGACAGTGGCACGAGGTTCGCTTCCTAGCCAAGGA
AAATTTTGCTATTCTCACCATCGATGGAGATGAAGCATCAGCAGTTCGAACTAATAGTCCCCTTCAAGTT
AAAACTGGCGAGAAGTACTTTTTTGGAGGTTTTCTGAACCAGATGAATAACTCAAGTCACTCTGTCCTTC
AGCCTTCATTCCAAGGATGCATGCAGCTCATTCAAGTGGACGATCAACTTGTAAATTTATACGAAGTGGC
ACAAAGGAAGCCGGGAAGTTTCGCGAATGTCAGCATTGACATGTGTGCGATCATAGACAGATGTGTGCCC
AATCACTGTGAGCATGGTGGAAAGTGCTCGCAAACATGGGACAGCTTCAAATGCACTTGTGATGAGACAG
GATACAGTGGGGCCACCTGCCACAACTCTATCTACGAGCCTTCCTGTGAAGCCTACAAACACCTAGGACA
GACATCAAATTATTACTGGATAGATCCTGATGGCAGCGGACCTCTGGGGCCTCTGAAAGTTTACTGCAAC
ATGACAGAGGACAAAGTGTGGACCATAGTGTCTCATGACTTGCAGATGCAGACGCCTGTGGTCGGCTACA
ACCCAGAAAAATACTCAGTGACACAGCTCGTTTACAGCGCCTCCATGGACCAGATAAGTGCCATCACTGA
CAGTGCCGAGTACTGCGAGCAGTATGTCTCCTATTTCTGCAAGATGTCAAGATTGTTGAACACCCCAGAT
GGAAGCCCTTACACTTGGTGGGTTGGCAAAGCCAACGAGAAGCACTACTACTGGGGAGGCTCTGGGCCTG
GAATCCAGAAATGTGCCTGCGGCATCGAACGCAACTGCACAGATCCCAAGTACTACTGTAACTGCGACGC
GGACTACAAGCAATGGAGGAAGGATGCTGGTTTCTTATCATACAAAGATCACCTGCCAGTGAGCCAAGTG
GTGGTTGGAGATACTGACCGTCAAGGCTCAGAAGCCAAATTGAGCGTAGGTCCTCTGCGCTGCCAAGGAG
ACAGGAATTATTGGAATGCCGCCTCTTTCCCAAACCCATCCTCCTACCTGCACTTCTCTACTTTCCAAGG
GGAAACTAGCGCTGACATTTCTTTCTACTTCAAAACATTAACCCCCTGGGGAGTGTTTCTTGAAAATATG
GGAAAGGAAGATTTCATCAAGCTGGAGCTGAAGTCTGCCACAGAAGTGTCCTTTTCATTTGATGTGGGAA
ATGGGCCAGTAGAGATTGTAGTGAGGTCACCAACCCCTCTCAACGATGACCAGTGGCACCGGGTCACTGC
AGAGAGGAATGTCAAGCAGGCCAGCCTACAGGTGGACCGGCTACCGCAGCAGATCCGCAAGGCCCCAACA
GAAGGCCACACCCGCCTGGAGCTCTACAGCCAGTTATTTGTGGGTGGTGCTGGGGGCCAGCAGGGCTTCC
TGGGCTGCATCCGCTCCTTGAGGATGAATGGGGTGACACTTGACCTGGAGGAAAGAGCAAAGGTCACATC
TGGGTTCATATCCGGATGCTCGGGCCATTGCACCAGCTATGGAACAAACTGTGAAAATGGAGGCAAATGC
CTAGAGAGATACCACGGTTACTCCTGCGATTGCTCTAATACTGCATATGATGGAACATTTTGCAACAAAG
ATGTTGGTGCATTTTTTGAAGAAGGGATGTGGCTACGATATAACTTTCAGGCACCAGCAACAAATGCCAG
AGACTCCAGCAGCAGAGTAGACAACGCTCCCGACCAGCAGAACTCCCACCCGGACCTGGCACAGGAGGAG
ATCCGCTTCAGCTTCAGCACCACCAAGGCGCCCTGCATTCTCCTCTACATCAGCTCCTTCACCACAGACT
TCTTGGCAGTCCTCGTCAAACCCACTGGAAGCTTACAGATTCGATACAACCTGGGTGGCACCCGAGAGCC
ATACAATATTGACGTAGACCACAGGAACATGGCCAATGGACAGCCCCACAGTGTCAACATCACCCGCCAC
GAGAAGACCATCTTTCTCAAGCTCGATCATTATCCTTCTGTGAGTTACCATCTGCCAAGTTCATCCGACA
CCCTCTTCAATTCTCCCAAGTCGCTCTTTCTGGGAAAAGTTATAGAAACAGGGAAAATTGACCAAGAGAT
TCACAAATACAACACCCCAGGATTCACTGGTTGCCTCTCCAGAGTCCAGTTCAACCAGATCGCCCCTCTC
AAGGCCGCCTTGAGGCAGACAAACGCCTCGGCTCACGTCCACATCCAGGGCGAGCTGGTGGAGTCCAACT
GCGGGGCCTCGCCGCTGACCCTCTCCCCCATGTCGTCCGCCACCGACCCCTGGCACCTGGATCACCTGGA
TTCAGCCAGTGCGGATTTTCCATATAATCCAGGACAAGGCCAAGCTATAAGAAATGGAGTCAACAGAAAC
TCGGCTATCATTGGAGGCGTCATTGCTGTGGTGATTTTCACCATCCTGTGCACCCTGGTCTTCCTGATCC
GGTACATGTTCCGCCACAAGGGCACCTACCATACCAACGAAGCAAAGGGGGCGGAGTCGGCAGAGAGCGC
GGACGCCGCCATCATGAACAACGACCCCAACTTCACAGAGACCATTGATGAAAGCAAAAAGGAATGGCTC
ATTTGA

Translation (1331 aa):
MQAAPRAGCGAALLLWIVSSCLCRAWTAPSTSQKCDEPLVSGLPHVAFSSSSSISGSYSPGYAKINKRGG
AGGWSPSDSDHYQWLQVDFGNRKQISAIATQGRYSSSDWVTQYRMLYSDTGRNWKPYHQDGNIWAFPGNI
NSDGVVRHELQHPIIARYVRIVPLDWNGEGRIGLRIEVYGCSYWADVINFDGHVVLPYRFRNKKMKTLKD
VIALNFKTSESEGVILHGEGQQGDYITLELKKAKLVLSLNLGSNQLGPIYGHTSVMTGSLLDDHHWHSVV
IERQGRSINLTLDRSMQHFRTNGEFDYLDLDYEITFGGIPFSGKPSSSSRKNFKGCMESINYNGVNITDL
ARRKKLEPSNVGNLSFSCVEPYTVPVFFNATSYLEVPGRLNQDLFSVSFQFRTWNPNGLLVFSHFADNLG
NVEIDLTESKVGVHINITQTKMSQIDISSGSGLNDGQWHEVRFLAKENFAILTIDGDEASAVRTNSPLQV
KTGEKYFFGGFLNQMNNSSHSVLQPSFQGCMQLIQVDDQLVNLYEVAQRKPGSFANVSIDMCAIIDRCVP
NHCEHGGKCSQTWDSFKCTCDETGYSGATCHNSIYEPSCEAYKHLGQTSNYYWIDPDGSGPLGPLKVYCN
MTEDKVWTIVSHDLQMQTPVVGYNPEKYSVTQLVYSASMDQISAITDSAEYCEQYVSYFCKMSRLLNTPD
GSPYTWWVGKANEKHYYWGGSGPGIQKCACGIERNCTDPKYYCNCDADYKQWRKDAGFLSYKDHLPVSQV
VVGDTDRQGSEAKLSVGPLRCQGDRNYWNAASFPNPSSYLHFSTFQGETSADISFYFKTLTPWGVFLENM
GKEDFIKLELKSATEVSFSFDVGNGPVEIVVRSPTPLNDDQWHRVTAERNVKQASLQVDRLPQQIRKAPT
EGHTRLELYSQLFVGGAGGQQGFLGCIRSLRMNGVTLDLEERAKVTSGFISGCSGHCTSYGTNCENGGKC
LERYHGYSCDCSNTAYDGTFCNKDVGAFFEEGMWLRYNFQAPATNARDSSSRVDNAPDQQNSHPDLAQEE
IRFSFSTTKAPCILLYISSFTTDFLAVLVKPTGSLQIRYNLGGTREPYNIDVDHRNMANGQPHSVNITRH
EKTIFLKLDHYPSVSYHLPSSSDTLFNSPKSLFLGKVIETGKIDQEIHKYNTPGFTGCLSRVQFNQIAPL
KAALRQTNASAHVHIQGELVESNCGASPLTLSPMSSATDPWHLDHLDSASADFPYNPGQGQAIRNGVNRN
SAIIGGVIAVVIFTILCTLVFLIRYMFRHKGTYHTNEAKGAESAESADAAIMNNDPNFTETIDESKKEWL
I


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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