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Report for CCDS5810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5810.1 Public Homo sapiens 7 TSPAN33 24 110 108 CCDS HistoryNCBI Gene:340348Re-query CCDS DB by CCDS ID:5810.1Re-query CCDS DB by GeneID:340348See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5810.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000486685.3 ENSP00000483872.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000486685.3Link to Ensembl Protein Viewer:ENSP00000483872.1Re-query CCDS DB by Nucleotide ID:ENST00000486685Re-query CCDS DB by Protein ID:ENSP00000483872
Original member Current member NCBI NM_178562.5 NP_848657.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178562.5Link to Protein Sequence:NP_848657.1Re-query CCDS DB by Nucleotide ID:NM_178562Re-query CCDS DB by Protein ID:NP_848657Link to BLAST:NP_848657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848657.1 283 Q86UF1 283 100% 0 0

Chromosomal Locations for CCDS 5810.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 129144981 129145082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129161679 129161736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129162394 129162521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129162833 129162907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129164474 129164569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129166778 129166906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129167399 129167560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 129167773 129167874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCGCGGAGACCCCGGGCGCCGGCCGCCTCCGGGGAGGAGTTCTCCTTCGTCAGCCCGCTGGTGAAAT
ACCTGCTCTTCTTCTTCAACATGCTCTTCTGGGTGATTTCCATGGTGATGGTGGCTGTGGGTGTCTACGC
TCGGCTAATGAAGCATGCAGAAGCAGCCCTAGCCTGCCTGGCAGTGGACCCTGCCATCCTGCTGATCGTG
GTGGGTGTCCTCATGTTCCTGCTCACCTTCTGTGGCTGCATTGGGTCCCTCCGCGAGAACATCTGCCTCC
TGCAGACGTTCTCCCTCTGCCTCACCGCTGTGTTCCTGCTGCAGCTGGCCGCTGGGATCCTGGGCTTCGT
CTTCTCAGACAAGGCTCGAGGGAAAGTGAGTGAGATCATCAACAATGCCATTGTGCACTACCGAGATGAC
TTGGATCTGCAGAACCTCATTGATTTTGGCCAGAAAAAGTTTAGCTGCTGTGGAGGGATTTCCTACAAGG
ACTGGTCTCAGAACATGTATTTCAACTGCTCAGAAGACAACCCCAGTCGAGAGCGCTGCTCTGTGCCTTA
CTCCTGTTGCTTGCCTACTCCTGACCAGGCAGTGATCAACACTATGTGTGGCCAAGGTATGCAGGCCTTT
GACTACTTGGAAGCTAGCAAAGTCATCTACACCAATGGCTGTATTGACAAGTTGGTCAACTGGATACACA
GCAACCTATTCTTACTTGGTGGTGTGGCTCTAGGCCTGGCCATCCCCCAGCTGGTGGGAATTCTGCTGTC
CCAGATCCTAGTGAATCAGATCAAAGATCAGATCAAGCTACAGCTCTACAACCAGCAGCACCGGGCTGAC
CCATGGTACTGA

Translation (283 aa):
MARRPRAPAASGEEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLAVDPAILLIV
VGVLMFLLTFCGCIGSLRENICLLQTFSLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDD
LDLQNLIDFGQKKFSCCGGISYKDWSQNMYFNCSEDNPSRERCSVPYSCCLPTPDQAVINTMCGQGMQAF
DYLEASKVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQILVNQIKDQIKLQLYNQQHRAD
PWY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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