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Report for CCDS4182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4182.1 Public Homo sapiens 5 PITX1 24 110 108 CCDS HistoryNCBI Gene:5307Re-query CCDS DB by CCDS ID:4182.1Re-query CCDS DB by GeneID:5307See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4182.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265340.12 ENSP00000265340.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265340.12Link to Ensembl Protein Viewer:ENSP00000265340.6Re-query CCDS DB by Nucleotide ID:ENST00000265340Re-query CCDS DB by Protein ID:ENSP00000265340
Original member Current member EBI ENST00000506438.5 ENSP00000427542.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506438.5Link to Ensembl Protein Viewer:ENSP00000427542.1Re-query CCDS DB by Nucleotide ID:ENST00000506438Re-query CCDS DB by Protein ID:ENSP00000427542
Original member Current member NCBI NM_002653.5 NP_002644.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002653.5Link to Protein Sequence:NP_002644.4Re-query CCDS DB by Nucleotide ID:NM_002653Re-query CCDS DB by Protein ID:NP_002644Link to BLAST:NP_002644.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002644.4 314 P78337 314 100% 0 0

Chromosomal Locations for CCDS 4182.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135028779 135029321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135031276 135031508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135033713 135033881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGACGCCTTCAAGGGGGGCATGAGCCTGGAGCGGCTGCCGGAGGGGCTCCGGCCGCCGCCGCCGCCAC
CCCATGACATGGGGCCCGCCTTCCACCTGGCCCGGCCCGCCGACCCCCGCGAGCCGCTCGAGAACTCCGC
CAGCGAGTCGTCTGACACGGAGCTGCCAGAGAAGGAGCGCGGCGGGGAACCCAAGGGGCCCGAGGACAGT
GGTGCGGGAGGCACGGGCTGCGGCGGCGCAGACGACCCAGCCAAGAAGAAGAAGCAGCGGCGGCAACGTA
CGCACTTCACAAGCCAGCAGTTGCAAGAGCTAGAGGCCACGTTCCAGAGGAACCGCTACCCCGACATGAG
CATGAGGGAGGAGATCGCCGTGTGGACCAACCTCACCGAGCCGCGCGTGCGGGTCTGGTTCAAGAACCGG
CGAGCCAAGTGGCGTAAGCGCGAGCGTAACCAGCAGCTGGACCTGTGCAAGGGTGGCTACGTGCCGCAGT
TCAGCGGCCTAGTGCAGCCCTACGAGGACGTGTACGCCGCCGGCTACTCCTACAACAACTGGGCCGCCAA
GAGCCTGGCGCCAGCGCCGCTCTCCACCAAGAGCTTCACCTTCTTCAACTCCATGAGCCCGCTGTCGTCG
CAGTCCATGTTCTCAGCACCCAGCTCCATCTCCTCCATGACCATGCCGTCCAGCATGGGCCCAGGCGCCG
TGCCTGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGCCAT
GTCGCCGGGCGCTTGCCCGTACGGCACTCCCGCCTCGCCCTACAGCGTCTACCGGGACACGTGCAACTCG
AGCCTAGCCAGCCTGCGGCTCAAGTCCAAACAGCACTCGTCGTTTGGCTACGGCGGCCTGCAGGGCCCGG
CCTCGGGCCTCAACGCGTGCCAGTACAACAGCTGA

Translation (314 aa):
MDAFKGGMSLERLPEGLRPPPPPPHDMGPAFHLARPADPREPLENSASESSDTELPEKERGGEPKGPEDS
GAGGTGCGGADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNR
RAKWRKRERNQQLDLCKGGYVPQFSGLVQPYEDVYAAGYSYNNWAAKSLAPAPLSTKSFTFFNSMSPLSS
QSMFSAPSSISSMTMPSSMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDTCNS
SLASLRLKSKQHSSFGYGGLQGPASGLNACQYNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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