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Report for CCDS13333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13333.1 Public Homo sapiens 20 SERINC3 24 110 108 CCDS HistoryNCBI Gene:10955Re-query CCDS DB by CCDS ID:13333.1Re-query CCDS DB by GeneID:10955See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000255175.5 ENSP00000255175.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000255175.5Link to Ensembl Protein Viewer:ENSP00000255175.1Re-query CCDS DB by Nucleotide ID:ENST00000255175Re-query CCDS DB by Protein ID:ENSP00000255175
Original member Current member EBI ENST00000342374.5 ENSP00000340243.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342374.5Link to Ensembl Protein Viewer:ENSP00000340243.4Re-query CCDS DB by Nucleotide ID:ENST00000342374Re-query CCDS DB by Protein ID:ENSP00000340243
Original member Current member NCBI NM_006811.4 NP_006802.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006811.4Link to Protein Sequence:NP_006802.1Re-query CCDS DB by Nucleotide ID:NM_006811Re-query CCDS DB by Protein ID:NP_006802Link to BLAST:NP_006802.1
Original member Current member NCBI NM_198941.3 NP_945179.1 Accepted alive Link to Nucleotide Sequence:NM_198941.3Link to Protein Sequence:NP_945179.1Re-query CCDS DB by Nucleotide ID:NM_198941Re-query CCDS DB by Protein ID:NP_945179Link to BLAST:NP_945179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006802.1 473 Q13530-1 473 100% 0 0
NP_945179.1 473 Q13530-1 473 100% 0 0

Chromosomal Locations for CCDS 13333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 44500296 44500434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44501073 44501300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44503815 44503995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44504801 44504891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44506827 44506996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44509891 44510028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44511289 44511368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44512801 44512994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44513879 44514040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44521913 44521951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGGGGCTGTGCTGGGTGTCTTCTCCCTCGCCAGCTGGGTTCCATGCCTCTGCAGCGGTGCCTCATGTT
TGCTGTGTAGTTGCTGTCCTAACAGTAAGAATTCCACGGTGACTCGCCTCATTTATGCTTTCATTCTCCT
CCTGAGCACTGTCGTATCCTATATCATGCAGAGAAAAGAGATGGAAACTTACTTGAAGAAGATTCCTGGA
TTTTGTGAAGGGGGATTTAAAATCCATGAGGCTGATATAAATGCAGATAAAGATTGTGATGTGCTGGTTG
GTTATAAAGCTGTGTATCGGATCAGCTTTGCCATGGCCATCTTTTTCTTTGTCTTTTCTCTGCTCATGTT
CAAAGTAAAAACAAGTAAAGATCTCCGAGCGGCAGTACACAATGGGTTTTGGTTCTTCAAAATTGCTGCC
CTTATTGGAATCATGGTTGGCTCTTTCTACATCCCTGGGGGCTATTTCAGCTCAGTCTGGTTTGTTGTTG
GCATGATAGGGGCCGCCCTCTTCATCCTCATTCAGCTGGTGCTGCTGGTAGATTTTGCTCATTCTTGGAA
TGAATCATGGGTAAATCGAATGGAAGAAGGAAACCCAAGGTTGTGGTATGCTGCTTTACTGTCTTTCACA
AGCGCCTTTTATATCCTGTCAATCATCTGTGTCGGGCTGCTCTATACATATTACACCAAACCAGATGGCT
GCACAGAAAACAAGTTCTTCATCAGTATTAACCTGATCCTTTGCGTTGTGGCTTCTATTATATCGATCCA
CCCAAAAATTCAGGAACACCAGCCTCGCTCCGGCCTCTTGCAGTCCTCCCTCATCACCCTCTACACTATG
TACCTCACCTGGTCAGCCATGTCCAATGAACCTGATCGTTCCTGCAATCCCAACCTGATGAGCTTTATTA
CACGCATAACTGCACCAACCCTGGCTCCTGGAAATTCAACTGCTGTGGTCCCTACCCCTACTCCACCATC
AAAGAGTGGGTCTTTACTGGATTCAGATAATTTTATTGGACTGTTTGTCTTTGTTCTCTGCCTCTTGTAT
TCTAGCATCCGCACTTCCACTAATAGCCAAGTAGACAAGCTGACCCTGTCAGGGAGTGACAGCGTCATCC
TTGGTGATACAACTACCAGTGGTGCCAGTGATGAAGAAGATGGACAGCCTCGGCGGGCTGTGGACAACGA
GAAAGAGGGAGTGCAGTATAGCTACTCCTTATTCCACCTCATGCTCTGCTTGGCTTCCTTGTACATCATG
ATGACCCTGACCAGCTGGTACAGCCCTGATGCAAAGTTTCAGAGCATGACCAGCAAGTGGCCAGCTGTGT
GGGTCAAGATCAGCTCCAGCTGGGTCTGCCTCCTGCTTTACGTCTGGACCCTTGTGGCTCCACTTGTCCT
CACCAGTCGGGACTTCAGCTGA

Translation (473 aa):
MGAVLGVFSLASWVPCLCSGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPG
FCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFKIAA
LIGIMVGSFYIPGGYFSSVWFVVGMIGAALFILIQLVLLVDFAHSWNESWVNRMEEGNPRLWYAALLSFT
SAFYILSIICVGLLYTYYTKPDGCTENKFFISINLILCVVASIISIHPKIQEHQPRSGLLQSSLITLYTM
YLTWSAMSNEPDRSCNPNLMSFITRITAPTLAPGNSTAVVPTPTPPSKSGSLLDSDNFIGLFVFVLCLLY
SSIRTSTNSQVDKLTLSGSDSVILGDTTTSGASDEEDGQPRRAVDNEKEGVQYSYSLFHLMLCLASLYIM
MTLTSWYSPDAKFQSMTSKWPAVWVKISSSWVCLLLYVWTLVAPLVLTSRDFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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