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Report for CCDS6680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6680.1 Public Homo sapiens 9 S1PR3 24 110 108 CCDS HistoryNCBI Gene:1903Re-query CCDS DB by CCDS ID:6680.1Re-query CCDS DB by GeneID:1903See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358157.3 ENSP00000350878.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358157.3Link to Ensembl Protein Viewer:ENSP00000350878.2Re-query CCDS DB by Nucleotide ID:ENST00000358157Re-query CCDS DB by Protein ID:ENSP00000350878
Original member Current member EBI ENST00000375846.3 ENSP00000365006.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375846.3Link to Ensembl Protein Viewer:ENSP00000365006.3Re-query CCDS DB by Nucleotide ID:ENST00000375846Re-query CCDS DB by Protein ID:ENSP00000365006
Original member Current member NCBI NM_001395848.1 NP_001382777.1 Accepted alive Link to Nucleotide Sequence:NM_001395848.1Link to Protein Sequence:NP_001382777.1Re-query CCDS DB by Nucleotide ID:NM_001395848Re-query CCDS DB by Protein ID:NP_001382777Link to BLAST:NP_001382777.1
Original member Current member NCBI NM_005226.4 NP_005217.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005226.4Link to Protein Sequence:NP_005217.2Re-query CCDS DB by Nucleotide ID:NM_005226Re-query CCDS DB by Protein ID:NP_005217Link to BLAST:NP_005217.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382777.1 378 Q99500 378 100% 0 0
NP_005217.2 378 Q99500 378 100% 0 0

Chromosomal Locations for CCDS 6680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 89001201 89002337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGGCAACTGCCCTCCCGCCGCGTCTCCAGCCGGTGCGGGGGAACGAGACCCTGCGGGAGCATTACCAGT
ACGTGGGGAAGTTGGCGGGCAGGCTGAAGGAGGCCTCCGAGGGCAGCACGCTCACCACCGTGCTCTTCTT
GGTCATCTGCAGCTTCATCGTCTTGGAGAACCTGATGGTTTTGATTGCCATCTGGAAAAACAATAAATTT
CACAACCGCATGTACTTTTTCATTGGCAACCTGGCTCTCTGCGACCTGCTGGCCGGCATCGCTTACAAGG
TCAACATTCTGATGTCTGGCAAGAAGACGTTCAGCCTGTCTCCCACGGTCTGGTTCCTCAGGGAGGGCAG
TATGTTCGTGGCCCTTGGGGCGTCCACCTGCAGCTTACTGGCCATCGCCATCGAGCGGCACTTGACAATG
ATCAAAATGAGGCCTTACGACGCCAACAAGAGGCACCGCGTCTTCCTCCTGATCGGGATGTGCTGGCTCA
TTGCCTTCACGCTGGGCGCCCTGCCCATTCTGGGCTGGAACTGCCTGCACAATCTCCCTGACTGCTCTAC
CATCCTGCCCCTCTACTCCAAGAAGTACATTGCCTTCTGCATCAGCATCTTCACGGCCATCCTGGTGACC
ATCGTGATCCTCTACGCACGCATCTACTTCCTGGTGAAGTCCAGCAGCCGTAAGGTGGCCAACCACAACA
ACTCGGAGCGGTCCATGGCACTGCTGCGGACCGTGGTGATTGTGGTGAGCGTGTTCATCGCCTGCTGGTC
CCCACTCTTCATCCTCTTCCTCATTGATGTGGCCTGCAGGGTGCAGGCGTGCCCCATCCTCTTCAAGGCT
CAGTGGTTCATCGTGTTGGCTGTGCTCAACTCCGCCATGAACCCGGTCATCTACACGCTGGCCAGCAAGG
AGATGCGGCGGGCCTTCTTCCGTCTGGTCTGCAACTGCCTGGTCAGGGGACGGGGGGCCCGCGCCTCACC
CATCCAGCCTGCGCTCGACCCAAGCAGAAGTAAATCAAGCAGCAGCAACAATAGCAGCCACTCTCCGAAG
GTCAAGGAAGACCTGCCCCACACAGCCCCCTCATCCTGCATCATGGACAAGAACGCAGCACTTCAGAATG
GGATCTTCTGCAACTGA

Translation (378 aa):
MATALPPRLQPVRGNETLREHYQYVGKLAGRLKEASEGSTLTTVLFLVICSFIVLENLMVLIAIWKNNKF
HNRMYFFIGNLALCDLLAGIAYKVNILMSGKKTFSLSPTVWFLREGSMFVALGASTCSLLAIAIERHLTM
IKMRPYDANKRHRVFLLIGMCWLIAFTLGALPILGWNCLHNLPDCSTILPLYSKKYIAFCISIFTAILVT
IVILYARIYFLVKSSSRKVANHNNSERSMALLRTVVIVVSVFIACWSPLFILFLIDVACRVQACPILFKA
QWFIVLAVLNSAMNPVIYTLASKEMRRAFFRLVCNCLVRGRGARASPIQPALDPSRSKSSSSNNSSHSPK
VKEDLPHTAPSSCIMDKNAALQNGIFCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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