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Report for CCDS13006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13006.1 Public Homo sapiens 20 SCRT2 24 110 108 CCDS HistoryNCBI Gene:85508Re-query CCDS DB by CCDS ID:13006.1Re-query CCDS DB by GeneID:85508See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246104.7 ENSP00000246104.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000246104.7Link to Ensembl Protein Viewer:ENSP00000246104.5Re-query CCDS DB by Nucleotide ID:ENST00000246104Re-query CCDS DB by Protein ID:ENSP00000246104
Original member Current member NCBI NM_033129.4 NP_149120.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033129.4Link to Protein Sequence:NP_149120.1Re-query CCDS DB by Nucleotide ID:NM_033129Re-query CCDS DB by Protein ID:NP_149120Link to BLAST:NP_149120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149120.1 307 Q9NQ03 307 100% 0 0

Chromosomal Locations for CCDS 13006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 663671 664461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 675469 675601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGCCGCGCTCCTTCCTGGTAAAGAAGATCAAAGGGGACGGCTTCCAGTGCAGCGGGGTGCCGGCCCCCA
CCTACCACCCCTTGGAGACAGCCTACGTGCTGCCTGGCGCCCGGGGGCCTCCCGGGGACAACGGGTACGC
CCCGCACCGCCTGCCCCCGAGCAGCTACGATGCGGACCAGAAGCCGGGCCTGGAGCTGGCCCCGGCCGAG
CCCGCGTACCCGCCGGCGGCGCCGGAGGAGTACAGCGACCCCGAAAGCCCGCAGTCGAGCCTGTCGGCGC
GCTACTTCCGAGGGGAGGCGGCAGTGACCGACAGCTACTCCATGGACGCCTTCTTCATCTCGGACGGGCG
CTCGCGGCGGCGGCGGGGCGGGGGCGGCGGGGACGCGGGGGGCTCGGGAGACGCGGGGGGCGCCGGGGGG
CGCGCGGGGCGCGCGGGGGCGCAGGCGGGCGGCGGGCACCGGCACGCGTGCGCCGAGTGCGGCAAGACCT
ACGCCACGTCGTCGAACCTGAGCCGCCACAAGCAGACGCACCGCAGCCTGGACAGCCAGCTGGCGCGCAA
ATGCCCGACGTGCGGCAAGGCCTACGTGTCCATGCCCGCGCTCGCCATGCACCTGCTCACGCACAACCTG
CGCCACAAGTGCGGCGTCTGCGGCAAGGCCTTCTCGCGGCCCTGGCTGCTGCAGGGTCACATGCGCTCGC
ACACCGGCGAAAAGCCGTTCGGCTGCGCGCACTGCGGCAAGGCCTTCGCCGACCGCTCCAACCTGCGCGC
GCACATGCAGACGCACTCGGCCTTCAAGCACTACCGCTGCCGCCAGTGCGACAAGAGCTTCGCGCTCAAG
TCCTACCTCCACAAGCACTGCGAGGCGGCCTGCGCCAAGGCGGCCGAGCCACCCCCGCCGACCCCCGCCG
GCCCGGCCAGCTGA

Translation (307 aa):
MPRSFLVKKIKGDGFQCSGVPAPTYHPLETAYVLPGARGPPGDNGYAPHRLPPSSYDADQKPGLELAPAE
PAYPPAAPEEYSDPESPQSSLSARYFRGEAAVTDSYSMDAFFISDGRSRRRRGGGGGDAGGSGDAGGAGG
RAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHRSLDSQLARKCPTCGKAYVSMPALAMHLLTHNL
RHKCGVCGKAFSRPWLLQGHMRSHTGEKPFGCAHCGKAFADRSNLRAHMQTHSAFKHYRCRQCDKSFALK
SYLHKHCEAACAKAAEPPPPTPAGPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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