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Report for CCDS4955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4955.1 Public Homo sapiens 6 TINAG 24 110 108 CCDS HistoryNCBI Gene:27283Re-query CCDS DB by CCDS ID:4955.1Re-query CCDS DB by GeneID:27283See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259782.9 ENSP00000259782.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259782.9Link to Ensembl Protein Viewer:ENSP00000259782.4Re-query CCDS DB by Nucleotide ID:ENST00000259782Re-query CCDS DB by Protein ID:ENSP00000259782
Original member Current member NCBI NM_014464.4 NP_055279.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014464.4Link to Protein Sequence:NP_055279.3Re-query CCDS DB by Nucleotide ID:NM_014464Re-query CCDS DB by Protein ID:NP_055279Link to BLAST:NP_055279.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055279.3 476 Q9UJW2-1 476 100% 0 0

Chromosomal Locations for CCDS 4955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54308551 54308905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54320579 54320642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54321297 54321386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54326802 54326916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54343226 54343349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54347367 54347517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54349716 54349896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54351352 54351397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54354513 54354636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54380526 54380571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54389791 54389925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGTGGACCGGATATAAGATCTTAATCTTCTCTTATCTTACTACAGAAATCTGGATGGAGAAGCAGTATT
TATCTCAAAGAGAAGTGGACCTAGAGGCTTATTTCACTAGGAATCACACCGTTTTGCAAGGTACTCGATT
CAAAAGAGCCATTTTCCAAGGGCAATACTGTAGAAATTTTGGCTGTTGTGAAGACAGAGATGATGGCTGT
GTCACTGAGTTCTATGCGGCGAATGCGTTGTGCTACTGTGATAAATTCTGTGACAGAGAAAATTCTGATT
GCTGTCCTGACTACAAGTCCTTTTGCCGTGAAGAGAAAGAATGGCCTCCTCACACACAGCCTTGGTATCC
AGAAGGTTGCTTCAAAGATGGTCAACATTATGAAGAGGGATCAGTAATTAAAGAAAACTGCAACTCCTGC
ACATGCTCAGGACAGCAATGGAAATGTTCCCAGCATGTATGCCTTGTTCGTTCAGAATTAATTGAACAGG
TCAATAAAGGAGACTATGGATGGACAGCACAGAATTACAGCCAATTTTGGGGAATGACTTTAGAAGATGG
TTTTAAATTTCGCCTTGGCACTTTGCCACCTAGTCCCATGCTCCTGAGCATGAATGAAATGACAGCTTCT
TTACCTGCAACAACTGATCTTCCAGAGTTTTTTGTTGCTTCTTATAAATGGCCTGGATGGACTCATGGCC
CATTGGATCAAAAAAATTGTGCTGCATCCTGGGCATTTTCCACTGCAAGTGTGGCTGCTGACCGAATAGC
AATTCAGTCTAAGGGTCGATACACGGCCAATCTATCCCCTCAGAATTTGATCTCTTGCTGTGCCAAGAAC
CGTCATGGATGCAATAGTGGAAGCATCGATAGGGCTTGGTGGTACCTGAGAAAACGTGGACTGGTATCCC
ACGCATGCTACCCACTTTTCAAAGACCAAAATGCTACCAACAATGGATGTGCCATGGCAAGCAGGTCTGA
TGGGCGAGGAAAACGGCATGCCACGAAGCCATGTCCCAACAACGTAGAAAAATCTAACAGGATCTATCAA
TGTTCTCCTCCATACAGAGTCTCTTCCAACGAAACTGAGATAATGAAAGAAATCATGCAAAATGGACCAG
TTCAAGCCATAATGCAAGTCCGTGAAGATTTCTTCCATTATAAGACAGGGATATACAGACATGTTACCAG
CACAAATAAAGAATCAGAAAAATATCGAAAGCTTCAGACACATGCAGTCAAACTCACTGGATGGGGCACA
CTGAGAGGAGCACAAGGGCAGAAAGAAAAATTTTGGATTGCTGCCAATTCCTGGGGAAAGTCATGGGGAG
AGAATGGCTATTTCAGGATTCTTCGAGGAGTAAATGAGTCCGACATTGAAAAGTTGATTATCGCAGCTTG
GGGCCAACTGACGAGTTCTGATGAACCATAA

Translation (476 aa):
MWTGYKILIFSYLTTEIWMEKQYLSQREVDLEAYFTRNHTVLQGTRFKRAIFQGQYCRNFGCCEDRDDGC
VTEFYAANALCYCDKFCDRENSDCCPDYKSFCREEKEWPPHTQPWYPEGCFKDGQHYEEGSVIKENCNSC
TCSGQQWKCSQHVCLVRSELIEQVNKGDYGWTAQNYSQFWGMTLEDGFKFRLGTLPPSPMLLSMNEMTAS
LPATTDLPEFFVASYKWPGWTHGPLDQKNCAASWAFSTASVAADRIAIQSKGRYTANLSPQNLISCCAKN
RHGCNSGSIDRAWWYLRKRGLVSHACYPLFKDQNATNNGCAMASRSDGRGKRHATKPCPNNVEKSNRIYQ
CSPPYRVSSNETEIMKEIMQNGPVQAIMQVREDFFHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGT
LRGAQGQKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIAAWGQLTSSDEP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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