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Report for CCDS9097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9097.1 Public Homo sapiens 12 HCFC2 24 110 108 CCDS HistoryNCBI Gene:29915Re-query CCDS DB by CCDS ID:9097.1Re-query CCDS DB by GeneID:29915See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9097.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229330.9 ENSP00000229330.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229330.9Link to Ensembl Protein Viewer:ENSP00000229330.4Re-query CCDS DB by Nucleotide ID:ENST00000229330Re-query CCDS DB by Protein ID:ENSP00000229330
Original member Current member NCBI NM_013320.3 NP_037452.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013320.3Link to Protein Sequence:NP_037452.1Re-query CCDS DB by Nucleotide ID:NM_013320Re-query CCDS DB by Protein ID:NP_037452Link to BLAST:NP_037452.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037452.1 792 Q9Y5Z7-1 792 100% 0 0

Chromosomal Locations for CCDS 9097.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104064561 104064723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104066167 104066315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104067947 104068107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104079445 104079653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104080746 104080830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104082500 104082606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104082713 104082901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104086847 104087014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104087986 104088038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104093386 104093563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104095360 104095563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104096360 104096433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104098343 104098480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104101968 104102153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 104102959 104103273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGGCGGCTCCCAGCCTCCTCAACTGGAGGCGAGTTTCTTCCTTCACGGGGCCGGTCCCCCGCGCCCGGC
ACGGACACCGAGCGGTGGCCATCCGGGAGCTGATGATCATCTTTGGAGGGGGAAATGAGGGCATCGCGGA
TGAGCTGCACGTCTACAACACGGCTACGAATCAGTGGTTTCTGCCAGCTGTTAGAGGAGATATCCCTCCA
GGCTGTGCTGCCCATGGATTTGTCTGTGATGGTACCAGAATATTAGTATTTGGGGGAATGGTTGAATATG
GAAGATACAGCAATGAGTTATATGAGTTACAAGCAAGTCGTTGGTTATGGAAAAAAGTGAAACCCCATCC
CCCTCCTTCTGGTTTACCTCCTTGTCCTCGGCTTGGACATAGCTTCTCTTTATATGGTAACAAATGCTAT
TTGTTTGGTGGCCTGGCAAACGAAAGCGAAGATTCAAACAATAATGTTCCCAGATATTTAAATGATTTTT
ATGAGTTGGAGCTACAGCATGGCTCTGGTGTTGTGGGTTGGAGCATTCCAGTGACTAAAGGGGTTGTGCC
TTCTCCAAGAGAATCCCACACAGCTGTTATATATTGCAAAAAAGATTCTGGAAGTCCTAAAATGTATGTT
TTTGGTGGAATGTGTGGTGCTCGCCTGGATGACCTATGGCAGCTTGACTTAGAAACTATGTCATGGTCAA
AACCAGAAACTAAAGGGACAGTGCCACTTCCACGAAGCCTTCATACAGCCAGTGTTATAGGAAACAAGAT
GTACATTTTTGGTGGATGGGTCCCACATAAGGGGGAAAATACTGAGACTTCACCTCATGATTGTGAATGG
AGATGTACCAGTTCATTTTCTTACCTAAATCTGGATACAACAGAGTGGACCACCCTAGTATCAGATTCTC
AGGAAGATAAAAAAAATTCAAGACCAAGACCAAGAGCTGGCCACTGTGCTGTTGCAATCGGCACTCGATT
GTATTTTTGGAGTGGAAGAGATGGCTACAAAAAAGCACTGAATAGTCAAGTTTGCTGCAAGGATCTTTGG
TATCTTGATACTGAGAAACCACCGGCACCATCTCAAGTACAGCTGATCAAAGCCACTACCAACTCCTTTC
ATGTCAAGTGGGATGAAGTGTCTACAGTTGAGGGCTATCTTTTGCAGTTGAGTACAGACTTGCCATACCA
AGCTGCATCATCAGATTCTTCAGCAGCACCAAATATGCAAGGAGTCAGGATGGACCCTCACAGACAAGGC
AGTAATAACATCGTTCCTAACAGTATCAATGATACAATAAACAGCACAAAAACTGAACAGCCAGCCACAA
AAGAAACTTCAATGAAAAACAAACCAGACTTTAAAGCACTGACGGATTCTAATGCCATTTTATATCCATC
TTTGGCATCAAATGCTTCTAATCATAATAGTCATGTGGTGGATATGCTAAGGAAAAATGAAGGTCCTCAC
ACTTCAGCAAATGTAGGTGTTCTAAGTAGTTGCCTGGATGTAAGAACAGTAATTCCTGAAACATCTGTAT
CCAGTACTGTTTCCAGCACACAAACTATGGTAACCCAGCAGACCATTAAAACTGAATCATCCAGTACAAA
TGGGGCAGTTGTTAAAGATGAAACTTCACTAACAACATTCAGTACCAAATCTGAAGTTGATGAAACATAT
GCACTGCCTGCAACGAAGATCAGCCGTGTAGAGACACATGCTACAGCAACGCCGTTTTCTAAAGAGACTC
CTTCAAATCCAGTGGCCACAGTGAAAGCGGGAGAACGACAATGGTGTGATGTGGGAATTTTTAAAAATAA
TACAGCTTTGGTGAGCCAGTTTTATTTGCTGCCAAAAGGGAAGCAAAGCATCTCAAAGGTAGGAAATGCA
GATGTACCTGACTACAGCTTGCTTAAGAAACAAGATCTTGTTCCAGGCACAGGATACAGATTCAGGGTTG
CTGCAATCAATGGTTGTGGGATAGGTCCTTTCAGCAAAATCAGTGAATTTAAAACTTGTATTCCTGGTTT
TCCTGGAGCTCCTTCTGCAGTCAGAATTTCAAAGAATGTTGAAGGTATCCACCTTTCCTGGGAACCTCCA
ACCTCACCTTCTGGAAATATTTTGGAATATTCAGCCTACTTGGCTATCCGCACAGCACAGATACAAGATA
ATCCAAGTCAACTTGTGTTCATGAGGATTTATTGTGGTCTTAAGACATCATGTATAGTAACTGCTGGGCA
ACTTGCAAATGCACATATTGATTATACATCCAGGCCTGCCATTGTGTTCAGGATATCAGCAAAGAATGAA
AAGGGATATGGACCAGCTACACAAGTTCGGTGGCTTCAAGGTAACAATAAGAAAGCACCTTTAAATTGA

Translation (792 aa):
MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTATNQWFLPAVRGDIPP
GCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPHPPPSGLPPCPRLGHSFSLYGNKCY
LFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGVVPSPRESHTAVIYCKKDSGSPKMYV
FGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENTETSPHDCEW
RCTSSFSYLNLDTTEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLW
YLDTEKPPAPSQVQLIKATTNSFHVKWDEVSTVEGYLLQLSTDLPYQAASSDSSAAPNMQGVRMDPHRQG
SNNIVPNSINDTINSTKTEQPATKETSMKNKPDFKALTDSNAILYPSLASNASNHNSHVVDMLRKNEGPH
TSANVGVLSSCLDVRTVIPETSVSSTVSSTQTMVTQQTIKTESSSTNGAVVKDETSLTTFSTKSEVDETY
ALPATKISRVETHATATPFSKETPSNPVATVKAGERQWCDVGIFKNNTALVSQFYLLPKGKQSISKVGNA
DVPDYSLLKKQDLVPGTGYRFRVAAINGCGIGPFSKISEFKTCIPGFPGAPSAVRISKNVEGIHLSWEPP
TSPSGNILEYSAYLAIRTAQIQDNPSQLVFMRIYCGLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNE
KGYGPATQVRWLQGNNKKAPLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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