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Report for CCDS6554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6554.1 Public Homo sapiens 9 SPMIP6 24 110 108 CCDS HistoryNCBI Gene:84688Re-query CCDS DB by CCDS ID:6554.1Re-query CCDS DB by GeneID:84688See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6554.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297623.7 ENSP00000297623.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297623.7Link to Ensembl Protein Viewer:ENSP00000297623.2Re-query CCDS DB by Nucleotide ID:ENST00000297623Re-query CCDS DB by Protein ID:ENSP00000297623
Original member Current member NCBI NM_032596.4 NP_115985.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032596.4Link to Protein Sequence:NP_115985.2Re-query CCDS DB by Nucleotide ID:NM_032596Re-query CCDS DB by Protein ID:NP_115985Link to BLAST:NP_115985.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115985.2 262 Q8NCR6-1 262 100% 0 0

Chromosomal Locations for CCDS 6554.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34379646 34379732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34380902 34381131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34381369 34381444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34382754 34382869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34385637 34385781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34397499 34397633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (789 nt):
ATGTTCCTGTTCTCCCGTAAGACCAGGACCCCTATCAGTACCTACAGTGACTCCTACAGGGCTCCCACCT
CCATCAAGGAGGTCTATAAGGACCCACCCCTGTGTGCCTGGGAAGCCAACAAGTTTCTGACTCCGGGTCT
GACTCATACCATGGAGCGACATGTGGATCCCGAAGCCCTGCAGAAGATGGCCAAATGTGCTGTACAGGAC
TACACTTATAGGGGGTCCATATCAGGCCACCCCTACTTGCCTGAGAAGTACTGGCTTTCTCAAGAGGAAG
CAGACAAATGCAGCCCAAACTACCTGGGCAGTGACTGGTACAACACATGGAGGATGGAACCTTACAACAG
CAGCTGCTGCAACAAGTATACCACCTACCTTCCTCGGCTGCCTAAGGAGGCCAGGATGGAGACAGCAGTT
CGAGGAATGCCCTTGGAATGCCCTCCTAGGCCGGAGCGGCTCAATGCCTACGAGCGCGAAGTGATGGTGA
ACATGCTGAACTCACTGTCGCGGAACCAGCAGCTGCCGCGGATCACGCCCCGATGCGGGTGCGTGGACCC
GCTGCCCGGCCGCCTGCCCTTCCATGGTTACGAAAGTGCTTGCTCGGGCCGCCACTACTGTCTGCGCGGG
ATGGACTACTACGCCAGCGGGGCGCCCTGCACCGACCGCCGCCTGCGGCCTTGGTGCCGGGAGCAACCGA
CTATGTGTACCTCCCTACGAGCACCGGCCCGGAATGCAGTGTGCTGTTACAACTCCCCCGCCGTCATACT
ACCCATATCCGAACCTTAG

Translation (262 aa):
MFLFSRKTRTPISTYSDSYRAPTSIKEVYKDPPLCAWEANKFLTPGLTHTMERHVDPEALQKMAKCAVQD
YTYRGSISGHPYLPEKYWLSQEEADKCSPNYLGSDWYNTWRMEPYNSSCCNKYTTYLPRLPKEARMETAV
RGMPLECPPRPERLNAYEREVMVNMLNSLSRNQQLPRITPRCGCVDPLPGRLPFHGYESACSGRHYCLRG
MDYYASGAPCTDRRLRPWCREQPTMCTSLRAPARNAVCCYNSPAVILPISEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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