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Report for CCDS10417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10417.1 Public Homo sapiens 16 RHOT2 24 110 108 CCDS HistoryNCBI Gene:89941Re-query CCDS DB by CCDS ID:10417.1Re-query CCDS DB by GeneID:89941See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10417.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315082.9 ENSP00000321971.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315082.9Link to Ensembl Protein Viewer:ENSP00000321971.4Re-query CCDS DB by Nucleotide ID:ENST00000315082Re-query CCDS DB by Protein ID:ENSP00000321971
Original member Current member NCBI NM_138769.3 NP_620124.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138769.3Link to Protein Sequence:NP_620124.1Re-query CCDS DB by Nucleotide ID:NM_138769Re-query CCDS DB by Protein ID:NP_620124Link to BLAST:NP_620124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620124.1 618 Q8IXI1-1 618 100% 0 0

Chromosomal Locations for CCDS 10417.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 668200 668236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 668353 668411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 668488 668569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 668656 668699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 669553 669606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 670123 670175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 670249 670357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 670456 670557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 670675 670773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 670892 671000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 671083 671203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 671697 671781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 671860 672002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 672084 672181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 672254 672384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 672489 672566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 672703 672825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 672928 673130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 673480 673606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1857 nt):
ATGAGGCGGGACGTGCGCATCCTGTTACTGGGCGAGGCCCAGGTGGGGAAGACGTCGCTGATCCTGTCCC
TGGTGGGCGAGGAGTTCCCCGAGGAGGTCCCTCCCCGCGCGGAGGAGATCACCATCCCCGCGGACGTCAC
CCCGGAGAAGGTGCCCACCCACATCGTGGACTACTCAGAAGCCGAGCAGACGGACGAGGAGCTGCGGGAG
GAGATCCACAAGGCAAACGTGGTGTGTGTGGTGTATGACGTCTCTGAGGAGGCCACCATTGAGAAGATTC
GAACTAAGTGGATCCCACTGGTGAATGGGGGGACCACGCAGGGGCCCAGGGTGCCCATCATCCTAGTGGG
CAACAAGTCAGACCTGCGGTCGGGGAGCTCCATGGAGGCCGTGCTCCCCATCATGAGCCAGTTTCCCGAG
ATTGAGACCTGCGTGGAGTGTTCGGCCAAGAACCTGAGGAACATCTCAGAGCTGTTCTACTACGCCCAGA
AGGCCGTCCTGCATCCCACAGCCCCCCTCTATGACCCTGAGGCCAAGCAGTTGAGGCCCGCGTGCGCCCA
GGCGCTGACGCGCATCTTCAGGCTCTCAGATCAGGACCTGGACCAGGCGCTCAGTGACGAAGAGCTCAAC
GCTTTCCAGAAATCCTGCTTTGGGCACCCCCTGGCCCCGCAGGCCCTGGAGGACGTGAAGACGGTGGTGT
GCAGGAACGTGGCGGGCGGCGTGCGGGAGGACCGGCTGACCCTGGATGGTTTCCTCTTCCTGAACACGCT
CTTCATCCAGCGCGGCCGGCACGAGACCACCTGGACCATCCTGCGGCGCTTCGGCTACAGCGATGCCCTG
GAGCTGACTGCGGACTATCTCTCCCCTCTGATCCACGTGCCCCCCGGCTGCAGCACGGAGCTCAACCACC
TTGGCTACCAGTTTGTGCAGAGAGTGTTTGAGAAGCACGACCAGGACCGCGACGGCGCCCTCTCGCCCGT
GGAGCTGCAAAGCCTTTTCAGTGTGTTCCCAGCAGCGCCCTGGGGCCCCGAGCTCCCACGCACAGTCCGC
ACAGAGGCCGGCCGGTTGCCCCTGCACGGATACCTCTGCCAGTGGACCCTGGTGACCTACCTGGACGTCC
GGAGCTGCCTTGGACACCTAGGCTACCTGGGCTACCCCACCCTCTGTGAGCAGGACCAGGCCCATGCCAT
CACAGTCACTCGTGAGAAGAGGCTGGACCAGGAGAAGGGACAGACGCAGCGGAGCGTCCTCCTGTGCAAG
GTGGTAGGGGCCCGTGGAGTGGGCAAGTCTGCCTTCCTGCAGGCCTTTCTCGGCCGCGGCCTGGGGCACC
AGGACACGAGGGAGCAGCCTCCCGGCTACGCCATCGACACGGTGCAGGTCAATGGACAGGAGAAGTACTT
GATCCTCTGTGAGGTGGGCACAGATGGTCTGCTGGCCACATCGCTGGACGCCACCTGTGACGTTGCCTGC
TTGATGTTTGATGGCAGTGACCCAAAGTCCTTTGCACATTGTGCCAGCGTCTACAAGCACCATTACATGG
ACGGGCAGACCCCCTGCCTCTTTGTCTCCTCCAAGGCCGACCTGCCCGAAGGTGTCGCGGTGTCTGGCCC
ATCACCGGCCGAGTTTTGCCGCAAGCACCGGCTACCCGCTCCCGTGCCGTTCTCCTGTGCTGGCCCAGCC
GAGCCCAGCACCACCATCTTCACCCAGCTCGCCACCATGGCCGCCTTCCCACATTTGGTCCACGCAGAGC
TGCATCCCTCTTCCTTCTGGCTCCGGGGGCTGCTGGGGGTTGTCGGGGCCGCCGTGGCCGCAGTCCTCAG
CTTCTCACTCTACAGGGTCCTGGTGAAGAGCCAGTGA

Translation (618 aa):
MRRDVRILLLGEAQVGKTSLILSLVGEEFPEEVPPRAEEITIPADVTPEKVPTHIVDYSEAEQTDEELRE
EIHKANVVCVVYDVSEEATIEKIRTKWIPLVNGGTTQGPRVPIILVGNKSDLRSGSSMEAVLPIMSQFPE
IETCVECSAKNLRNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDLDQALSDEELN
AFQKSCFGHPLAPQALEDVKTVVCRNVAGGVREDRLTLDGFLFLNTLFIQRGRHETTWTILRRFGYSDAL
ELTADYLSPLIHVPPGCSTELNHLGYQFVQRVFEKHDQDRDGALSPVELQSLFSVFPAAPWGPELPRTVR
TEAGRLPLHGYLCQWTLVTYLDVRSCLGHLGYLGYPTLCEQDQAHAITVTREKRLDQEKGQTQRSVLLCK
VVGARGVGKSAFLQAFLGRGLGHQDTREQPPGYAIDTVQVNGQEKYLILCEVGTDGLLATSLDATCDVAC
LMFDGSDPKSFAHCASVYKHHYMDGQTPCLFVSSKADLPEGVAVSGPSPAEFCRKHRLPAPVPFSCAGPA
EPSTTIFTQLATMAAFPHLVHAELHPSSFWLRGLLGVVGAAVAAVLSFSLYRVLVKSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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