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Report for CCDS3630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3630.1 Public Homo sapiens 4 HERC5 24 110 108 CCDS HistoryNCBI Gene:51191Re-query CCDS DB by CCDS ID:3630.1Re-query CCDS DB by GeneID:51191See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3630.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264350.8 ENSP00000264350.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264350.8Link to Ensembl Protein Viewer:ENSP00000264350.3Re-query CCDS DB by Nucleotide ID:ENST00000264350Re-query CCDS DB by Protein ID:ENSP00000264350
Original member Current member NCBI NM_016323.4 NP_057407.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016323.4Link to Protein Sequence:NP_057407.2Re-query CCDS DB by Nucleotide ID:NM_016323Re-query CCDS DB by Protein ID:NP_057407Link to BLAST:NP_057407.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057407.2 1024 Q9UII4 1024 100% 0 0

Chromosomal Locations for CCDS 3630.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88457270 88457534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88459347 88459470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88460095 88460171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88462135 88462356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88463532 88463623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88463855 88463985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88467059 88467204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88468346 88468422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88469157 88469260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88470614 88470673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88472409 88472502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88475841 88476030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88479353 88479507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88486115 88486228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88487069 88487179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88489166 88489336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88493012 88493155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88494165 88494331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88499926 88499992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88500915 88500985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88504232 88504415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88504495 88504597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 88505673 88505878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3075 nt):
ATGGAGCGGAGGTCGCGGAGGAAGTCGCGGCGCAACGGGCGCTCGACCGCGGGCAAGGCCGCCGCGACCC
AGCCCGCGAAGTCTCCGGGCGCACAGCTCTGGCTCTTTCCCAGCGCCGCGGGCCTCCACCGCGCGCTGCT
CCGGAGGGTGGAGGTGACGCGCCAACTCTGCTGCTCGCCGGGGCGCCTCGCGGTCTTGGAACGCGGCGGG
GCGGGCGTCCAGGTTCACCAGCTGCTCGCCGGGAGCGGCGGCGCCCGGACGCCGAAATGCATTAAATTAG
GAAAAAACATGAAGATACATTCCGTGGACCAAGGAGCAGAGCACATGCTGATTCTCTCATCAGATGGAAA
ACCATTTGAGTATGACAACTATAGCATGAAACATCTAAGGTTTGAAAGCATTTTACAAGAAAAAAAAATA
ATTCAGATCACATGTGGAGATTACCATTCTCTTGCACTCTCAAAAGGTGGTGAGCTTTTTGCCTGGGGAC
AGAACCTGCATGGGCAGCTTGGAGTTGGAAGGAAATTTCCCTCAACCACCACACCACAGATTGTGGAGCA
CCTCGCAGGAGTACCCTTGGCTCAGATTTCTGCCGGAGAAGCCCACAGCATGGCCTTATCCATGTCTGGC
AACATTTATTCATGGGGAAAAAATGAATGTGGACAACTAGGCCTGGGCCACACTGAGAGTAAAGATGATC
CATCCCTTATTGAAGGACTAGACAATCAGAAAGTTGAATTTGTCGCTTGTGGTGGCTCTCACAGTGCCCT
ACTCACACAGGATGGGCTGCTGTTTACTTTCGGTGCTGGAAAACATGGGCAACTTGGTCATAATTCAACA
CAGAATGAGCTAAGACCCTGTTTGGTGGCTGAGCTTGTTGGGTATAGAGTGACTCAGATAGCATGTGGAA
GGTGGCACACACTTGCCTATGTTTCTGATTTGGGAAAGGTCTTTTCCTTTGGTTCTGGAAAAGATGGACA
ACTGGGAAATGGTGGAACACGTGACCAGCTGATGCCGCTTCCAGTGAAAGTATCATCAAGTGAAGAACTC
AAACTTGAAAGCCATACCTCAGAAAAGGAGTTAATAATGATTGCTGGAGGGAATCAAAGCATTTTGCTCT
GGATAAAGAAAGAGAATTCATATGTTAATCTGAAGAGGACAATTCCTACTCTGAATGAAGGGACTGTAAA
GAGATGGATTGCTGATGTGGAGACTAAACGGTGGCAGAGCACAAAAAGGGAAATCCAAGAGATATTTTCA
TCTCCTGCTTGTCTAACTGGAAGTTTTTTAAGGAAAAGAAGAACTACAGAAATGATGCCTGTTTATTTGG
ACTTAAATAAAGCAAGAAACATCTTCAAGGAGTTAACCCAAAAGGACTGGATTACTAACATGATAACCAC
CTGCCTCAAAGATAATCTGCTCAAAAGACTTCCATTTCATTCTCCACCCCAAGAAGCTTTAGAAATTTTC
TTCCTTCTCCCAGAATGTCCTATGATGCATATTTCCAACAACTGGGAGAGCCTTGTGGTTCCATTTGCAA
AGGTTGTTTGTAAAATGAGTGACCAGTCTTCACTGGTTCTGGAAGAGTATTGGGCAACTCTGCAAGAATC
CACTTTCAGCAAACTGGTCCAGATGTTTAAAACAGCCGTCATATGCCAGTTGGATTACTGGGATGAAAGT
GCTGAGGAGAATGGTAATGTTCAAGCTCTCCTAGAAATGTTGAAGAAGCTGCACAGGGTAAACCAGGTGA
AATGTCAACTACCTGAAAGTATTTTCCAAGTAGACGAACTCTTGCACCGTCTCAATTTTTTTGTAGAAGT
ATGCAGAAGGTACTTGTGGAAAATGACTGTGGACGCTTCAGAAAATGTACAATGCTGCGTCATATTCAGT
CACTTTCCATTTATCTTTAATAATCTGTCGAAAATTAAACTACTACATACAGACACACTTTTAAAAATAG
AGAGTAAAAAACATAAAGCTTATCTTAGGTCGGCAGCAATTGAGGAAGAAAGAGAGTCTGAATTCGCTTT
GAGGCCCACGTTTGATCTAACAGTCAGAAGGAATCACTTGATTGAGGATGTTTTGAATCAGCTAAGTCAA
TTTGAGAATGAAGACCTGAGGAAAGAGTTATGGGTTTCATTTAGTGGAGAAATTGGGTATGACCTCGGAG
GAGTCAAGAAAGAGTTCTTCTACTGTCTGTTTGCAGAGATGATCCAGCCGGAATATGGGATGTTCATGTA
TCCTGAAGGGGCTTCCTGCATGTGGTTTCCTGTCAAGCCTAAATTTGAGAAGAAAAGATACTTCTTTTTT
GGGGTTCTATGTGGACTTTCCCTGTTCAATTGCAATGTTGCCAACCTTCCTTTCCCACTGGCACTGTTTA
AGAAACTTTTGGACCAAATGCCATCATTGGAAGACTTGAAAGAACTCAGTCCTGATTTGGGAAAGAATTT
GCAAACACTTCTGGATGATGAAGGTGATAACTTTGAGGAAGTATTTTACATCCATTTTAATGTGCACTGG
GACAGAAACGACACAAACTTAATTCCTAATGGAAGTAGCATAACTGTCAACCAGACTAACAAGAGAGACT
ATGTTTCTAAGTATATCAATTACATTTTCAACGACTCTGTAAAGGCGGTTTATGAAGAATTTCGGAGAGG
ATTTTATAAAATGTGCGACGAAGACATTATCAAATTATTCCACCCCGAAGAACTGAAGGATGTGATTGTT
GGAAATACAGATTATGATTGGAAAACATTTGAAAAGAATGCACGTTATGAACCAGGATATAACAGTTCAC
ATCCCACCATAGTGATGTTTTGGAAGGCTTTCCACAAATTGACTCTGGAAGAAAAGAAAAAATTCCTTGT
ATTTCTTACAGGAACTGACAGACTACAAATGAAAGATTTAAATAATATGAAAATAACATTTTGCTGTCCT
GAAAGTTGGAATGAAAGAGACCCTATAAGAGCACTGACATGTTTCAGTGTCCTCTTCCTCCCTAAATATT
CTACAATGGAAACAGTTGAAGAAGCGCTTCAAGAAGCCATCAACAACAACAGAGGATTTGGCTGA

Translation (1024 aa):
MERRSRRKSRRNGRSTAGKAAATQPAKSPGAQLWLFPSAAGLHRALLRRVEVTRQLCCSPGRLAVLERGG
AGVQVHQLLAGSGGARTPKCIKLGKNMKIHSVDQGAEHMLILSSDGKPFEYDNYSMKHLRFESILQEKKI
IQITCGDYHSLALSKGGELFAWGQNLHGQLGVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSG
NIYSWGKNECGQLGLGHTESKDDPSLIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHNST
QNELRPCLVAELVGYRVTQIACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLPVKVSSSEEL
KLESHTSEKELIMIAGGNQSILLWIKKENSYVNLKRTIPTLNEGTVKRWIADVETKRWQSTKREIQEIFS
SPACLTGSFLRKRRTTEMMPVYLDLNKARNIFKELTQKDWITNMITTCLKDNLLKRLPFHSPPQEALEIF
FLLPECPMMHISNNWESLVVPFAKVVCKMSDQSSLVLEEYWATLQESTFSKLVQMFKTAVICQLDYWDES
AEENGNVQALLEMLKKLHRVNQVKCQLPESIFQVDELLHRLNFFVEVCRRYLWKMTVDASENVQCCVIFS
HFPFIFNNLSKIKLLHTDTLLKIESKKHKAYLRSAAIEEERESEFALRPTFDLTVRRNHLIEDVLNQLSQ
FENEDLRKELWVSFSGEIGYDLGGVKKEFFYCLFAEMIQPEYGMFMYPEGASCMWFPVKPKFEKKRYFFF
GVLCGLSLFNCNVANLPFPLALFKKLLDQMPSLEDLKELSPDLGKNLQTLLDDEGDNFEEVFYIHFNVHW
DRNDTNLIPNGSSITVNQTNKRDYVSKYINYIFNDSVKAVYEEFRRGFYKMCDEDIIKLFHPEELKDVIV
GNTDYDWKTFEKNARYEPGYNSSHPTIVMFWKAFHKLTLEEKKKFLVFLTGTDRLQMKDLNNMKITFCCP
ESWNERDPIRALTCFSVLFLPKYSTMETVEEALQEAINNNRGFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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