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Report for CCDS2686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2686.1 Public Homo sapiens 3 RPSA 24 110 108 CCDS HistoryNCBI Gene:3921Re-query CCDS DB by CCDS ID:2686.1Re-query CCDS DB by GeneID:3921See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2686.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301821.11 ENSP00000346067.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301821.11Link to Ensembl Protein Viewer:ENSP00000346067.4Re-query CCDS DB by Nucleotide ID:ENST00000301821Re-query CCDS DB by Protein ID:ENSP00000346067
Original member Current member EBI ENST00000458478.6 ENSP00000410848.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000458478.6Link to Ensembl Protein Viewer:ENSP00000410848.2Re-query CCDS DB by Nucleotide ID:ENST00000458478Re-query CCDS DB by Protein ID:ENSP00000410848
Original member Current member EBI ENST00000697729.1 ENSP00000513423.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000697729.1Link to Ensembl Protein Viewer:ENSP00000513423.1Re-query CCDS DB by Nucleotide ID:ENST00000697729Re-query CCDS DB by Protein ID:ENSP00000513423
Original member Current member EBI ENST00000697730.1 ENSP00000513424.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000697730.1Link to Ensembl Protein Viewer:ENSP00000513424.1Re-query CCDS DB by Nucleotide ID:ENST00000697730Re-query CCDS DB by Protein ID:ENSP00000513424
Original member Current member EBI ENST00000697731.1 ENSP00000513425.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000697731.1Link to Ensembl Protein Viewer:ENSP00000513425.1Re-query CCDS DB by Nucleotide ID:ENST00000697731Re-query CCDS DB by Protein ID:ENSP00000513425
Original member Current member NCBI NM_002295.6 NP_002286.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002295.6Link to Protein Sequence:NP_002286.2Re-query CCDS DB by Nucleotide ID:NM_002295Re-query CCDS DB by Protein ID:NP_002286Link to BLAST:NP_002286.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002286.2 295 P08865 295 100% 0 0

Chromosomal Locations for CCDS 2686.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39407654 39407786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39408606 39408724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39410754 39410999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39411649 39411777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39411896 39412061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39412274 39412368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGTCCGGAGCCCTTGATGTCCTGCAAATGAAGGAGGAGGATGTCCTTAAGTTCCTTGCAGCAGGAACCC
ACTTAGGTGGCACCAATCTTGACTTCCAGATGGAACAGTACATCTATAAAAGGAAAAGTGATGGCATCTA
TATCATAAATCTCAAGAGGACCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCAATTGTTGCCATTGAAAAC
CCTGCTGATGTCAGTGTTATATCCTCCAGGAATACTGGCCAGAGGGCTGTGCTGAAGTTTGCTGCTGCCA
CTGGAGCCACTCCAATTGCTGGCCGCTTCACTCCTGGAACCTTCACTAACCAGATCCAGGCAGCCTTCCG
GGAGCCACGGCTTCTTGTGGTTACTGACCCCAGGGCTGACCACCAGCCTCTCACGGAGGCATCTTATGTT
AACCTACCTACCATTGCGCTGTGTAACACAGATTCTCCTCTGCGCTATGTGGACATTGCCATCCCATGCA
ACAACAAGGGAGCTCACTCAGTGGGTTTGATGTGGTGGATGCTGGCTCGGGAAGTTCTGCGCATGCGTGG
CACCATTTCCCGTGAACACCCATGGGAGGTCATGCCTGATCTGTACTTCTACAGAGATCCTGAAGAGATT
GAAAAAGAAGAGCAGGCTGCTGCTGAGAAGGCAGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTC
CCGCTCCTGAGTTCACTGCTACTCAGCCTGAGGTTGCAGACTGGTCTGAAGGTGTACAGGTGCCCTCTGT
GCCTATTCAGCAATTCCCTACTGAAGACTGGAGCGCTCAGCCTGCCACGGAAGACTGGTCTGCAGCTCCC
ACTGCTCAGGCCACTGAATGGGTAGGAGCAACCACTGACTGGTCTTAA

Translation (295 aa):
MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIEN
PADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYV
NLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEI
EKEEQAAAEKAVTKEEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAP
TAQATEWVGATTDWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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