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Report for CCDS43515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43515.1 Public Homo sapiens 6 CCDC170 24 110 108 CCDS HistoryNCBI Gene:80129Re-query CCDS DB by CCDS ID:43515.1Re-query CCDS DB by GeneID:80129See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43515.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239374.8 ENSP00000239374.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239374.8Link to Ensembl Protein Viewer:ENSP00000239374.6Re-query CCDS DB by Nucleotide ID:ENST00000239374Re-query CCDS DB by Protein ID:ENSP00000239374
Original member Current member NCBI NM_025059.4 NP_079335.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025059.4Link to Protein Sequence:NP_079335.2Re-query CCDS DB by Nucleotide ID:NM_025059Re-query CCDS DB by Protein ID:NP_079335Link to BLAST:NP_079335.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079335.2 715 Q8IYT3 715 100% 0 0

Chromosomal Locations for CCDS 43515.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 151494129 151494185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151536318 151536446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151538045 151538301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151544572 151544716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151548304 151548489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151573174 151573491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151585889 151586089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151593107 151593280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151596335 151596577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151615443 151615679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 151617947 151618147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGAGCCTGGACTGCACCAGCCATATCGCGCTGGGTGCCGCTTCGCCAGCGCCCGAGGAAACTTACGATC
ATCTTTCGGAAGTCCCGGTCACGCGGGAGCAGTTAAACCACTATCGGAATGTGGCTCAAAATGCTCGAAG
TGAACTTGCAGCAACTTTGGTCAAATTTGAATGTGCTCAGTCTGAGCTTCAAGACCTCCGATCCAAGATG
CTTTCTAAAGAAGTCTCCTGTCAAGAACTGAAAGCTGAAATGGAGAGCTACAAGGAAAACAATGCCAGAA
AATCATCTCTCCTTACCTCTTTGAGAGACAGAGTTCAGGAACTAGAAGAAGAATCAGCAGCACTTTCCAC
TTCTAAAATCAGAACAGAAATCACAGCTCACGCTGCAATCAAGGAGAACCAGGAATTAAAGAAGAAAGTT
GTAGAGTTAAATGAAAAATTACAAAAGTGTTCAAAAGAAAATGAGGAGAATAAGAAACAAGTTTCAAAGA
ATTGCAGGAAACATGAGGAATTTCTGACTCAACTGCGTGACTGCTTGGATCCAGATGAGAGGAATGACAA
GGCATCAGATGAAGATTTAATTTTAAAGCTTAGAGACCTGCGCAAAGAAAATGAATTCGTGAAAGGACAA
ATTGTTATTCTTGAAGAGACTATAAATGTCCATGAGATGGAAGCAAAAGCTAGCAGAGAAACGATCATGA
GGCTGGCTTCAGAAGTCAACAGAGAGCAGAAAAAAGCTGCCTCCTGTACTGAAGAGAAAGAGAAGCTGAA
CCAGGACCTGCTCAGTGCTGTAGAAGCAAAAGAAGCTCTTGAAAGGGAAGTTAAGATCTTCCAAGAAAGG
CTGCTTGCTGGCCAGCAGGTCTGGGATGCCTCAAAGCAGGAAGTGAGCCTCCTGAAGAAAAGCTCTTCTG
AGTTGGAGAAGAGTTTGAAGGCCAGTCAGGATGCAGTCACAACCTCACAAAGCCAGTACTTCTCATTTAG
GGAGAAAATCGCAGCCCTCCTTAGGGGCAGATTGAGCATGACTGGGTCCACTGAGGACACCATTTTGGAG
AAGATTCGAGAAATGGACAGCCGGGAAGAAAGCAGGGACCGGATGGTCTCCCAGCTTGAAGCCCAAATAT
CTGAGCTTGTTGAACAGTTGGGAAAGGAGTCTGGGTTTCACCAGAAAGCTCTCCAGAGGGCCCAGAAAGC
AGAGAATATGTTGGAGACTCTTCAGGGTCAGCTGACACACCTGGAGGCAGAGCTGGTTTCTGGAGGTGTT
TTGCGAGACAACTTGAATTTTGAGAAACAAAAATATCTTAAATTTCTGGATCAGCTTTCTCAGAAAATGA
AGTTGGACCAGATGGCTGCCGAACTTGGCTTTGACATGCGGCTGGACGTGGTTTTAGCTCGAACAGAGCA
GCTGGTTCGTCTTGAGAGCAATGCAGTCATTGAGAACAAGACCATTGCCCACAATTTGCAGAGAAAGCTA
AAGACACAGAAAGAGAGACTGGAGAGCAAAGAATTACACATGAGCCTCCTCCGGCAGAAAATAGCCCAGC
TGGAGGAGGAGAAGCAGGCACGCACGGCCTTGGTGGTTGAGAGGGACAACGCGCATCTTACCATCAGGAA
CTTGCAGAAGAAGGTGGAGAGGCTGCAGAAAGAGCTGAACACGTGTCGAGACTTGCACACCGAGCTCAAA
GCCAAACTGGCCGACACCAATGAACTGAAGATTAAAACTTTGGAACAGACTAAAGCCATTGAAGATCTAA
ACAAATCCAGAGACCAACTGGAGAAGATGAAGGAGAAAGCTGAGAAAAAGCTCATGTCTGTCAAGTCAGA
ACTGGATACCACAGAACATGAGGCTAAGGAGAATAAAGAAAGGGCCAGAAACATGATAGAAGTGGTAACC
AGTGAAATGAAGACACTAAAAAAATCTCTGGAAGAAGCAGAAAAGAGAGAAAAGCAGCTGGCAGACTTCA
GGGAGGTGGTGTCGCAGATGCTAGGCTTGAACGTGACCAGCCTTGCTCTTCCTGATTATGAAATCATCAA
GTGTCTTGAAAGATTGGTCCATTCACATCAGCATCACTTTGTTACCTGTGCCTGCCTCAAAGATGTGACT
ACTGGGCAAGAGAGGCACCCACAAGGCCATTTACAGCTTCTTCATTGA

Translation (715 aa):
MSLDCTSHIALGAASPAPEETYDHLSEVPVTREQLNHYRNVAQNARSELAATLVKFECAQSELQDLRSKM
LSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQELKKKV
VELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDPDERNDKASDEDLILKLRDLRKENEFVKGQ
IVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQER
LLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILE
KIREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGV
LRDNLNFEKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLVRLESNAVIENKTIAHNLQRKL
KTQKERLESKELHMSLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELK
AKLADTNELKIKTLEQTKAIEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEVVT
SEMKTLKKSLEEAEKREKQLADFREVVSQMLGLNVTSLALPDYEIIKCLERLVHSHQHHFVTCACLKDVT
TGQERHPQGHLQLLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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