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Report for CCDS4790.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4790.2 Public Homo sapiens 6 SMIM29 24 110 108 CCDS HistoryNCBI Gene:221491Re-query CCDS DB by CCDS ID:4790.2Re-query CCDS DB by GeneID:221491See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 4790.1
This coding region is updated to annotate a different coding sequence, which is shorter and reflects the use of an alternate start codon that is better supported by conservation and ribosome profiling.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4790.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000476320.6 ENSP00000417604.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000476320.6Link to Ensembl Protein Viewer:ENSP00000417604.2Re-query CCDS DB by Nucleotide ID:ENST00000476320Re-query CCDS DB by Protein ID:ENSP00000417604
Original member Current member EBI ENST00000481533.5 ENSP00000418062.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000481533.5Link to Ensembl Protein Viewer:ENSP00000418062.2Re-query CCDS DB by Nucleotide ID:ENST00000481533Re-query CCDS DB by Protein ID:ENSP00000418062
Original member Current member NCBI NM_001008703.4 NP_001008703.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008703.4Link to Protein Sequence:NP_001008703.2Re-query CCDS DB by Nucleotide ID:NM_001008703Re-query CCDS DB by Protein ID:NP_001008703Link to BLAST:NP_001008703.2
Original member Current member NCBI NM_178508.6 NP_848603.3 Accepted alive Link to Nucleotide Sequence:NM_178508.6Link to Protein Sequence:NP_848603.3Re-query CCDS DB by Nucleotide ID:NM_178508Re-query CCDS DB by Protein ID:NP_848603Link to BLAST:NP_848603.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008703.2 102 Q86T20-1 102 100% 0 0
NP_848603.3 102 Q86T20-1 102 100% 0 0

Chromosomal Locations for CCDS 4790.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34246803 34246868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34247044 34247149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34247467 34247492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34247681 34247791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGAGTAACACCACTGTGCCCAATGCCCCCCAGGCCAACAGCGACTCCATGGTGGGCTATGTGTTGGGGC
CCTTCTTCCTCATCACCCTGGTCGGGGTGGTGGTGGCTGTGGTAATGTATGTACAGAAGAAAAAGCGGGT
GGACCGGCTGCGCCATCACCTGCTCCCCATGTACAGCTATGACCCAGCTGAGGAACTGCATGAGGCTGAG
CAGGAGCTGCTCTCTGACATGGGAGACCCCAAGGTGGTACATGGCTGGCAGAGTGGCTACCAGCACAAGC
GGATGCCACTGCTGGATGTCAAGACGTGA

Translation (102 aa):
MSNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVMYVQKKKRVDRLRHHLLPMYSYDPAEELHEAE
QELLSDMGDPKVVHGWQSGYQHKRMPLLDVKT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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