CCDS Report for Consensus CDS

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Report for CCDS43072.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
43072.1	Public	Homo sapiens	3	TRAK1	24	110	108

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43072.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000327628.10	ENSP00000328998.5	MANE Select	Accepted	alive
		NCBI	NM_001042646.3	NP_001036111.1	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001036111.1	953	Q9UPV9-1	953	100%	0	0

Chromosomal Locations for CCDS 43072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)

Genome Browser links:

Chromosome	Start	Stop
3	42091470	42091560
3	42125420	42125614
3	42176814	42176890
3	42184685	42184801
3	42188045	42188145
3	42189016	42189124
3	42191558	42191636
3	42193075	42193205
3	42193824	42193898
3	42194804	42194941
3	42199177	42199253
3	42200818	42201054
3	42202436	42202752
3	42209767	42209985
3	42219494	42219596
3	42222942	42223737

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2862 nt):
ATGGCATTGGTTTTTCAATTCGGGCAGCCCGTCAGGGCTCAGCCTCTGCCAGGACTCTGCCACGGCAAGC TCATTCGGACAAACGCCTGTGATGTGTGCAACAGCACCGATCTTCCGGAAGTCGAGATCATTAGCCTGCT GGAGGAGCAGCTGCCCCATTATAAGTTAAGAGCCGACACCATCTACGGTTATGACCACGACGACTGGCTC CATACACCTCTCATTTCTCCAGATGCCAACATTGACCTCACAACCGAGCAAATTGAAGAGACGTTAAAAT ACTTCCTTTTATGTGCTGAAAGAGTTGGCCAGATGACTAAGACATATAATGACATAGATGCTGTCACTCG GCTTCTTGAGGAGAAAGAGCGGGATTTAGAATTGGCCGCTCGCATCGGCCAGTCGTTGTTGAAGAAGAAC AAGACCCTAACCGAGAGGAACGAGCTGCTGGAGGAGCAGGTGGAACACATCAGGGAGGAGGTGTCTCAGC TCCGGCATGAGCTGTCCATGAAGGATGAGCTGCTTCAGTTCTACACCAGCGCTGCGGAGGAGAGTGAGCC CGAGTCCGTTTGCTCAACCCCGTTGAAGAGGAATGAGTCGTCCTCCTCAGTCCAGAATTACTTTCATTTG GATTCTCTTCAAAAGAAGCTGAAAGACCTTGAAGAGGAGAATGTTGTACTTCGATCCGAGGCCAGCCAGC TGAAGACAGAGACCATCACCTATGAGGAGAAGGAGCAGCAGCTGGTCAATGACTGCGTGAAGGAGCTGAG GGATGCCAATGTCCAGATTGCTAGTATCTCAGAGGAACTGGCCAAGAAGACGGAAGATGCTGCCCGCCAG CAAGAGGAGATCACACACCTGCTATCGCAAATAGTTGATTTGCAGAAAAAGGCAAAAGCTTGCGCAGTGG AAAATGAAGAACTTGTCCAGCATCTGGGGGCTGCTAAGGATGCCCAGCGGCAGCTCACAGCCGAGCTGCG TGAGCTGGAGGACAAGTACGCAGAGTGCATGGAGATGCTGCATGAGGCGCAGGAGGAGCTGAAGAACCTC CGGAACAAAACCATGCCCAATACCACGTCTCGGCGCTACCACTCACTGGGCCTGTTTCCCATGGATTCCT TGGCAGCAGAGATTGAGGGAACGATGCGCAAGGAGCTGCAGTTGGAAGAGGCCGAGTCTCCAGACATCAC TCACCAGAAGCGTGTCTTTGAGACAGTAAGAAACATCAACCAGGTTGTCAAGCAGAGATCTCTGACCCCT TCTCCCATGAACATCCCCGGCTCCAACCAGTCCTCGGCCATGAACTCCCTCCTGTCCAGCTGCGTCAGCA CCCCCCGGTCCAGCTTCTACGGCAGCGACATAGGCAACGTCGTCCTCGACAACAAGACCAACAGCATCAT TCTGGAAACAGAGGCAGCCGACCTGGGAAACGATGAGCGGAGTAAGAAGCCGGGGACGCCGGGCACCCCA GGCTCCCACGACCTGGAGACGGCGCTGAGGCGGCTGTCCCTGCGCCGGGAGAACTACCTCTCGGAGAGGA GGTTCTTTGAGGAGGAGCAAGAGAGGAAGCTCCAGGAGCTGGCGGAGAAGGGCGAGCTGCGCAGCGGCTC CCTCACACCCACTGAGAGCATCATGTCCCTGGGCACGCACTCCCGCTTCTCCGAGTTCACCGGCTTCTCT GGCATGTCCTTCAGCAGCCGCTCCTACCTGCCTGAGAAGCTCCAGATCGTGAAGCCGCTGGAAGGTTCCG CCACACTTCACCACTGGCAGCAGTTGGCCCAACCTCACCTTGGGGGCATCCTGGACCCCCGGCCCGGTGT GGTCACCAAGGGCTTCCGGACGCTGGATGTTGACCTGGACGAAGTGTACTGCCTTAACGACTTTGAAGAA GATGACACAGGTGACCACATTTCTCTCCCACGCCTAGCTACCTCCACTCCAGTTCAGCACCCAGAGACCT CAGCGCACCATCCTGGGAAGTGCATGTCTCAGACCAACTCCACCTTCACCTTCACCACCTGTCGCATCCT GCATCCTTCAGATGAGCTCACTCGGGTCACACCAAGCCTTAACTCAGCCCCAACTCCAGCTTGTGGCAGC ACCAGCCACTTGAAATCCACGCCGGTGGCCACACCATGCACTCCACGGAGACTGAGCCTGGCTGAGTCCT TCACTAACACCCGTGAGTCCACGACCACCATGAGCACATCCCTGGGGCTCGTGTGGCTGTTGAAGGAGCG GGGCATTTCTGCTGCCGTGTACGACCCCCAGAGCTGGGACAGGGCCGGCCGGGGCTCCCTCCTGCACTCC TACACGCCCAAGATGGCTGTGATCCCCTCTACTCCGCCGAACTCGCCTATGCAGACACCCACATCCTCCC CACCCTCCTTTGAGTTCAAGTGCACGAGCCCTCCCTACGACAATTTCCTGGCTTCCAAGCCAGCCAGCTC CATCCTGAGGGAAGTGAGAGAAAAGAACGTCCGCAGCAGCGAGAGCCAGACCGACGTGTCCGTCTCCAAC CTCAACCTCGTGGACAAAGTCAGGAGGTTTGGGGTGGCCAAAGTGGTGAACTCAGGGCGAGCCCATGTCC CCACCTTGACTGAGGAGCAGGGACCCCTCCTCTGTGGGCCCCCGGGGCCAGCACCAGCCCTTGTTCCCAG AGGCCTGGTACCTGAGGGCCTGCCCCTCAGATGCCCCACTGTCACCAGTGCCATCGGTGGGCTGCAGCTC AATAGTGGCATCCGGCGGAATCGCAGCTTCCCCACCATGGTGGGATCTAGCATGCAGATGAAAGCTCCTG TGACTCTCACCTCGGGCATCTTGATGGGTGCTAAGCTCTCCAAACAAACTAGCTTACGGTGA
Translation (953 aa):
MALVFQFGQPVRAQPLPGLCHGKLIRTNACDVCNSTDLPEVEIISLLEEQLPHYKLRADTIYGYDHDDWL HTPLISPDANIDLTTEQIEETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKN KTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHL DSLQKKLKDLEEENVVLRSEASQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQ QEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNL RNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEAESPDITHQKRVFETVRNINQVVKQRSLTP SPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDIGNVVLDNKTNSIILETEAADLGNDERSKKPGTPGTP GSHDLETALRRLSLRRENYLSERRFFEEEQERKLQELAEKGELRSGSLTPTESIMSLGTHSRFSEFTGFS GMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEE DDTGDHISLPRLATSTPVQHPETSAHHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPSLNSAPTPACGS TSHLKSTPVATPCTPRRLSLAESFTNTRESTTTMSTSLGLVWLLKERGISAAVYDPQSWDRAGRGSLLHS YTPKMAVIPSTPPNSPMQTPTSSPPSFEFKCTSPPYDNFLASKPASSILREVREKNVRSSESQTDVSVSN LNLVDKVRRFGVAKVVNSGRAHVPTLTEEQGPLLCGPPGPAPALVPRGLVPEGLPLRCPTVTSAIGGLQL NSGIRRNRSFPTMVGSSMQMKAPVTLTSGILMGAKLSKQTSLR

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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