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Report for CCDS12725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12725.1 Public Homo sapiens 19 SPACA4 24 110 108 CCDS HistoryNCBI Gene:171169Re-query CCDS DB by CCDS ID:12725.1Re-query CCDS DB by GeneID:171169See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321762.3 ENSP00000312774.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321762.3Link to Ensembl Protein Viewer:ENSP00000312774.1Re-query CCDS DB by Nucleotide ID:ENST00000321762Re-query CCDS DB by Protein ID:ENSP00000312774
Original member Current member NCBI NM_133498.3 NP_598005.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133498.3Link to Protein Sequence:NP_598005.1Re-query CCDS DB by Nucleotide ID:NM_133498Re-query CCDS DB by Protein ID:NP_598005Link to BLAST:NP_598005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598005.1 124 Q8TDM5 124 100% 0 0

Chromosomal Locations for CCDS 12725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48606979 48607353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGGTCCTGTGCTGGCTGCTGCTTCTGGTGATGGCTCTGCCCCCAGGCACGACGGGCGTCAAGGACTGCG
TCTTCTGTGAGCTCACCGACTCCATGCAGTGTCCTGGTACCTACATGCACTGTGGCGATGACGAGGACTG
CTTCACAGGCCACGGGGTCGCCCCGGGCACTGGTCCGGTCATCAACAAAGGCTGCCTGCGAGCCACCAGC
TGCGGCCTTGAGGAACCCGTCAGCTACAGGGGCGTCACCTACAGCCTCACCACCAACTGCTGCACCGGCC
GCCTGTGTAACAGAGCCCCGAGCAGCCAGACAGTGGGGGCCACCACCAGCCTGGCACTGGGGCTGGGTAT
GCTGCTTCCTCCACGTTTGCTGTGA

Translation (124 aa):
MVLCWLLLLVMALPPGTTGVKDCVFCELTDSMQCPGTYMHCGDDEDCFTGHGVAPGTGPVINKGCLRATS
CGLEEPVSYRGVTYSLTTNCCTGRLCNRAPSSQTVGATTSLALGLGMLLPPRLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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