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Report for CCDS31154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31154.1 Public Homo sapiens 10 FAM171A1 24 110 108 CCDS HistoryNCBI Gene:221061Re-query CCDS DB by CCDS ID:31154.1Re-query CCDS DB by GeneID:221061See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31154.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378116.9 ENSP00000367356.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378116.9Link to Ensembl Protein Viewer:ENSP00000367356.4Re-query CCDS DB by Nucleotide ID:ENST00000378116Re-query CCDS DB by Protein ID:ENSP00000367356
Original member Current member NCBI NM_001010924.2 NP_001010924.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010924.2Link to Protein Sequence:NP_001010924.1Re-query CCDS DB by Nucleotide ID:NM_001010924Re-query CCDS DB by Protein ID:NP_001010924Link to BLAST:NP_001010924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010924.1 890 Q5VUB5 890 100% 0 0

Chromosomal Locations for CCDS 31154.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 15212915 15214601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 15215996 15216110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 15220944 15221060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 15248639 15248815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 15254721 15254879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 15275855 15275947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 15283878 15284105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 15370956 15371052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2673 nt):
ATGAGCAGGTCCGCGACGCTGCTGCTGTGCCTGCTGGGCTGCCACGTCTGGAAGGCGGTGACCAAGACGC
TGCGGGAGCCCGGCGCCGGAGCCCAAGAGGTGACGTTAAAGGTGCACATCAGCGACGCCAGCACCCACCA
GCCCGTAGCAGATGCGCTCATCGAGATCTTCACCAACCAGGCCTCCATAGCCTCTGGCACCTCGGGGACT
GATGGCGTCGCCTTTATCAAGTTCCAGTATAAGCTGGGCAGTCAGTTGATTGTCACCGCCTCGAAGCATG
CCTACGTGCCAAACTCTGCCCCATGGAAGCCAATCCGGTTACCTGTATTTTCCTCTCTGAGCCTTGGCCT
GCTTCCAGAACGCTCTGCCACTCTAATGGTATATGAAGATGTCGTCCAAATAGTATCAGGATTCCAAGGT
GCCCGGCCACAGCCTCGCGTTCATTTCCAGAGAAGGGCTCTGAGGTTGCCTGAGAACACCAGCTACAGTG
ACCTGACCGCGTTTCTCACGGCCGCCAGCTCCCCTTCGGAGGTGGACAGTTTTCCTTATTTGCGAGGATT
AGACGGAAATGGAACAGGAAACAGCACCAGGCATGACCTGACCCCAGTCACAGCCGTCAGCGTCCACTTG
CTGAGCAGTAATGGAACGCCGGTGCTGGTGGATGGTCCCATCTATGTCACTGTGCCCCTGGCCACGCAGA
GCAGCCTGAGGCACAATGCCTATGTCGCGGCGTGGCGGTTTGACCAGAAGCTGGGAACGTGGCTGAAGAG
CGGTCTGGGTCTTGTGCACCAGGAAGGCAGCCAGCTGACGTGGACATACATTGCCCCCCAGTTGGGGTAC
TGGGTGGCCGCCATGTCCCCTCCCATCCCAGGTCCCGTTGTAACACAGGACATTACCACGTATCACACGG
TGTTTCTTTTGGCCATTTTAGGAGGAATGGCTTTCATACTTTTGGTTTTGCTGTGTCTCCTTTTATATTA
TTGCAGGAGGAAGTGCTTGAAACCTCGTCAGCACCACAGAAAACTGCAGCTCCCTGCAGGACTGGAGAGT
TCCAAAAGAGACCAGTCCACGTCCATGTCACACATTAACTTGCTGTTTTCACGCCGAGCGTCAGAATTCC
CTGGCCCGCTGTCCGTCACCAGCCACGGCCGCCCCGAGGCCCCCGGCACGAAGGAACTGATGAGTGGAGT
CCATTTGGAAATGATGTCTCCGGGCGGCGAAGGGGACCTGCACACCCCCATGCTCAAGCTCTCCTACAGC
ACCTCCCAGGAATTTAGCTCCCGGGAGGAGCTCCTCTCTTGCAAGGAAGAGGATAAAAGCCAGATCTCCT
TTGATAACCTCACTCCAAGTGGGACGCTGGGGAAAGACTACCATAAGTCAGTGGAGGTTTTTCCCTTAAA
GGCAAGAAAATCTATGGAAAGAGAAGGCTACGAGTCCTCGGGCAATGATGACTACAGGGGTAGTTACAAC
ACCGTGCTCTCACAGCCTTTATTTGAAAAGCAGGACAGAGAAGGTCCAGCCTCCACGGGAAGCAAACTCA
CCATTCAGGAACATCTGTACCCCGCGCCTTCATCACCTGAGAAAGAACAGCTGCTGGACCGCAGACCCAC
TGAATGTATGATGTCGCGATCAGTAGATCACCTCGAGAGACCTACGTCCTTCCCACGGCCCGGCCAGTTA
ATCTGCTGCAGTTCTGTCGACCAGGTCAATGACAGCGTTTACAGGAAAGTACTGCCTGCCTTGGTCATCC
CGGCTCATTATATGAAACTCCCCGGGGACCACTCCTATGTCAGCCAGCCCCTCGTCGTCCCGGCTGATCA
GCAGCTTGAGATAGAAAGACTACAGGCTGAGCTGTCCAATCCCCATGCCGGGATCTTCCCACACCCGTCC
TCACAGATCCAGCCCCAGCCCCTGTCTTCCCAGGCCATCTCTCAGCAGCACCTGCAGGATGCGGGCACCC
GGGAGTGGAGCCCTCAGAACGCATCCATGTCGGAGTCTCTCTCCATCCCAGCTTCCCTGAACGACGCGGC
TTTGGCTCAGATGAACAGTGAGGTGCAGCTCCTGACTGAAAAGGCCCTGATGGAGCTTGGGGGTGGGAAG
CCGCTTCCGCACCCCCGGGCGTGGTTCGTCTCCTTGGATGGCAGGTCCAACGCTCACGTTAGACATTCAT
ACATTGATCTCCAAAGAGCTGGAAGGAACGGAAGTAATGATGCCAGTTTGGACTCTGGCGTAGATATGAA
TGAACCAAAATCAGCCCGGAAGGGAAGGGGAGATGCTTTGTCTCTGCAGCAGAACTACCCGCCCGTCCAA
GAGCACCAGCAGAAAGAGCCTCGAGCCCCAGACAGCACGGCCTACACGCAGCTCGTGTACCTGGATGACG
TGGAACAGAGTGGTAGCGAATGTGGGACCACGGTCTGTACCCCCGAGGACAGTGCCCTGCGATGCTTGTT
GGAGGGGTCGAGTCGGAGAAGTGGTGGCCAGCTGCCCAGCCTGCAGGAGGAGACGACCAGACGGACTGCG
GATGCCCCCTCGGAGCCAGCAGCCAGCCCCCACCAGAGAAGATCTGCCCACGAGGAAGAGGAAGACGATG
ATGATGATGACCAAGGAGAAGACAAGAAAAGCCCCTGGCAGAAACGGGAGGAGAGGCCCCTGATGGCGTT
TAACATTAAATGA

Translation (890 aa):
MSRSATLLLCLLGCHVWKAVTKTLREPGAGAQEVTLKVHISDASTHQPVADALIEIFTNQASIASGTSGT
DGVAFIKFQYKLGSQLIVTASKHAYVPNSAPWKPIRLPVFSSLSLGLLPERSATLMVYEDVVQIVSGFQG
ARPQPRVHFQRRALRLPENTSYSDLTAFLTAASSPSEVDSFPYLRGLDGNGTGNSTRHDLTPVTAVSVHL
LSSNGTPVLVDGPIYVTVPLATQSSLRHNAYVAAWRFDQKLGTWLKSGLGLVHQEGSQLTWTYIAPQLGY
WVAAMSPPIPGPVVTQDITTYHTVFLLAILGGMAFILLVLLCLLLYYCRRKCLKPRQHHRKLQLPAGLES
SKRDQSTSMSHINLLFSRRASEFPGPLSVTSHGRPEAPGTKELMSGVHLEMMSPGGEGDLHTPMLKLSYS
TSQEFSSREELLSCKEEDKSQISFDNLTPSGTLGKDYHKSVEVFPLKARKSMEREGYESSGNDDYRGSYN
TVLSQPLFEKQDREGPASTGSKLTIQEHLYPAPSSPEKEQLLDRRPTECMMSRSVDHLERPTSFPRPGQL
ICCSSVDQVNDSVYRKVLPALVIPAHYMKLPGDHSYVSQPLVVPADQQLEIERLQAELSNPHAGIFPHPS
SQIQPQPLSSQAISQQHLQDAGTREWSPQNASMSESLSIPASLNDAALAQMNSEVQLLTEKALMELGGGK
PLPHPRAWFVSLDGRSNAHVRHSYIDLQRAGRNGSNDASLDSGVDMNEPKSARKGRGDALSLQQNYPPVQ
EHQQKEPRAPDSTAYTQLVYLDDVEQSGSECGTTVCTPEDSALRCLLEGSSRRSGGQLPSLQEETTRRTA
DAPSEPAASPHQRRSAHEEEEDDDDDDQGEDKKSPWQKREERPLMAFNIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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