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Report for CCDS33130.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33130.1 Public Homo sapiens 19 ZNF543 24 110 108 CCDS HistoryNCBI Gene:125919Re-query CCDS DB by CCDS ID:33130.1Re-query CCDS DB by GeneID:125919See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33130.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321545.5 ENSP00000322545.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321545.5Link to Ensembl Protein Viewer:ENSP00000322545.3Re-query CCDS DB by Nucleotide ID:ENST00000321545Re-query CCDS DB by Protein ID:ENSP00000322545
Original member Current member NCBI NM_213598.4 NP_998763.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_213598.4Link to Protein Sequence:NP_998763.2Re-query CCDS DB by Nucleotide ID:NM_213598Re-query CCDS DB by Protein ID:NP_998763Link to BLAST:NP_998763.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_998763.2 600 Q08ER8 600 100% 0 0

Chromosomal Locations for CCDS 33130.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57320854 57320871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57323682 57323808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57326633 57326728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57327704 57329265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGCAGCCTCGGCGCAGGTGTCTGTGACCTTTGAGGATGTGGCTGTGACATTCACCCAGGAGGAGTGGG
GACAGTTGGATGCAGCCCAGAGAACCTTGTATCAGGAGGTGATGCTGGAGACCTGCGGACTTCTCATGTC
TCTGGGCTGTCCTTTGTTCAAACCAGAGCTGATCTACCAGTTGGATCACAGACAGGAGCTATGGATGGCT
ACAAAAGACCTCTCCCAAAGCTCCTATCCAGGTGACAACACAAAACCCAAGACCACAGAGCCTACCTTTT
CTCACCTGGCCTTGCCTGAGGAAGTCTTACTCCAGGAACAACTGACACAAGGAGCCTCAAAGAACTCCCA
ATTAGGGCAATCCAAGGATCAGGATGGGCCATCTGAAATGCAAGAAGTCCACTTGAAAATAGGGATAGGC
CCCCAGCGGGGGAAGCTGCTGGAGAAAATGAGTTCTGAACGTGATGGTTTGGGGTCAGATGATGGTGTAT
GTACAAAGATTACACAGAAACAAGTTTCAACAGAAGGTGATCTCTATGAATGTGATTCACATGGACCAGT
TACAGATGCCTTGATTCGCGAAGAGAAAAATTCCTATAAATGTGAGGAATGCGGGAAAGTGTTTAAAAAG
AATGCCCTCCTTGTTCAGCATGAACGGATTCACACTCAAGTGAAGCCCTATGAATGCACAGAGTGTGGGA
AAACCTTTAGCAAGAGCACTCATCTTCTTCAGCACCTCATCATCCACACTGGGGAGAAGCCCTATAAGTG
CATGGAGTGTGGGAAGGCTTTTAACCGCAGGTCACACCTCACACGGCACCAGCGGATTCACAGTGGAGAG
AAGCCTTATAAGTGCAGTGAATGTGGAAAGGCCTTCACCCACCGCTCCACTTTTGTCTTGCATCACAGGA
GCCACACTGGAGAAAAACCCTTTGTGTGCAAAGAGTGTGGCAAAGCCTTTCGAGATAGGCCAGGTTTCAT
TCGACACTACATCATCCACACGGGAGAGAAGCCCTATGAGTGCATTGAGTGTGGGAAGGCCTTCAACCGC
CGGTCATACCTCACGTGGCACCAACAGATTCACACTGGAGTGAAACCCTTTGAATGCAACGAGTGTGGAA
AAGCTTTTTGCGAGAGTGCAGACCTCATTCAACACTACATTATCCACACTGGGGAGAAGCCCTATAAGTG
CATGGAGTGTGGGAAGGCGTTCAACCGTAGGTCACACCTCAAGCAGCATCAACGGATTCACACTGGGGAG
AAGCCTTATGAATGCAGTGAATGTGGAAAGGCCTTCACCCACTGCTCCACTTTTGTCTTGCATAAAAGGA
CCCACACAGGAGAAAAACCCTATGAATGCAAAGAATGTGGAAAAGCCTTTAGTGATAGGGCAGACCTCAT
TCGCCACTTCAGCATCCACACTGGAGAGAAACCCTATGAGTGCGTGGAGTGTGGAAAGGCCTTCAACCGC
AGCTCACACCTCACGAGGCACCAACAGATTCACACTGGAGAGAAACCCTATGAATGCATCCAGTGTGGGA
AAGCCTTTTGCCGGAGCGCAAACCTTATTCGACACTCCATCATTCACACTGGAGAGAAGCCGTATGAATG
CAGTGAGTGTGGAAAGGCTTTTAATCGCGGCTCATCCCTCACACATCATCAAAGGATTCATACTGGGAGA
AACCCTACCATTGTAACAGATGTGGGAAGACCTTTTATGACTGCACAGACTTCAGTCAACATCCAGGAAC
TTTTATTAGGGAAAGAGTTTTTGAATATCACCACTGAAGAAAATCTGTGGTGA

Translation (600 aa):
MAASAQVSVTFEDVAVTFTQEEWGQLDAAQRTLYQEVMLETCGLLMSLGCPLFKPELIYQLDHRQELWMA
TKDLSQSSYPGDNTKPKTTEPTFSHLALPEEVLLQEQLTQGASKNSQLGQSKDQDGPSEMQEVHLKIGIG
PQRGKLLEKMSSERDGLGSDDGVCTKITQKQVSTEGDLYECDSHGPVTDALIREEKNSYKCEECGKVFKK
NALLVQHERIHTQVKPYECTECGKTFSKSTHLLQHLIIHTGEKPYKCMECGKAFNRRSHLTRHQRIHSGE
KPYKCSECGKAFTHRSTFVLHHRSHTGEKPFVCKECGKAFRDRPGFIRHYIIHTGEKPYECIECGKAFNR
RSYLTWHQQIHTGVKPFECNECGKAFCESADLIQHYIIHTGEKPYKCMECGKAFNRRSHLKQHQRIHTGE
KPYECSECGKAFTHCSTFVLHKRTHTGEKPYECKECGKAFSDRADLIRHFSIHTGEKPYECVECGKAFNR
SSHLTRHQQIHTGEKPYECIQCGKAFCRSANLIRHSIIHTGEKPYECSECGKAFNRGSSLTHHQRIHTGR
NPTIVTDVGRPFMTAQTSVNIQELLLGKEFLNITTEENLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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