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Report for CCDS33642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33642.1 Public Homo sapiens 22 ELFN2 24 110 108 CCDS HistoryNCBI Gene:114794Re-query CCDS DB by CCDS ID:33642.1Re-query CCDS DB by GeneID:114794See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33642.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402918.7 ENSP00000385277.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402918.7Link to Ensembl Protein Viewer:ENSP00000385277.1Re-query CCDS DB by Nucleotide ID:ENST00000402918Re-query CCDS DB by Protein ID:ENSP00000385277
Original member Current member NCBI NM_052906.5 NP_443138.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052906.5Link to Protein Sequence:NP_443138.2Re-query CCDS DB by Nucleotide ID:NM_052906Re-query CCDS DB by Protein ID:NP_443138Link to BLAST:NP_443138.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443138.2 820 Q5R3F8 820 100% 0 0

Chromosomal Locations for CCDS 33642.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37373072 37375534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGCTGCGCCTGGGGCTGTGCGCGGCGGCGCTGCTGTGCGTGTGCCGGCCGGGTGCCGTGCGTGCCGACT
GCTGGCTCATTGAGGGCGACAAGGGCTACGTGTGGCTGGCCATCTGCAGCCAGAACCAGCCGCCCTACGA
GACCATCCCGCAGCACATCAATAGCACCGTGCACGACCTGCGGCTCAACGAGAACAAGCTCAAAGCCGTG
CTCTACTCCTCGCTCAACCGCTTTGGGAACCTCACCGACCTCAACCTCACCAAGAACGAGATCTCCTACA
TCGAGGACGGTGCCTTCCTGGGCCAGTCGAGCCTGCAGGTCCTGCAGCTGGGCTACAACAAGCTCAGCAA
CCTGACGGAGGGCATGCTGCGAGGCATGAGCCGCCTGCAGTTCCTCTTTGTCCAGCACAACCTCATCGAG
GTGGTGACGCCCACCGCCTTCTCCGAGTGCCCGAGCCTCATCAGCATCGACCTGTCCTCCAACCGCCTCA
GCCGCCTGGACGGTGCCACCTTTGCCAGCCTCGCCAGCCTGATGGTGTGTGAGCTGGCCGGCAACCCCTT
CAACTGTGAGTGCGACCTCTTCGGCTTCCTGGCCTGGCTGGTGGTCTTCAACAACGTCACCAAGAACTAC
GACCGCCTGCAGTGTGAGTCGCCGCGGGAGTTTGCCGGCTACCCGCTGCTGGTGCCCCGGCCCTACCACA
GCCTCAACGCCATCACCGTACTCCAGGCCAAGTGTCGGAATGGCTCGCTGCCCGCCCGGCCCGTGAGCCA
CCCCACGCCCTACTCCACCGACGCCCAGAGGGAGCCAGACGAGAACTCGGGCTTCAACCCCGACGAGATC
CTTTCGGTGGAGCCGCCGGCCTCGTCCACCACGGATGCGTCGGCAGGGCCAGCCATCAAGCTGCACCACG
TCACGTTCACCTCGGCCACCCTGGTGGTCATCATCCCACACCCCTACAGCAAGATGTACATCCTCGTGCA
GTACAACAACAGCTACTTCTCCGACGTCATGACCCTCAAGAACAAGAAGGAGATCGTGACGCTGGACAAA
CTGCGGGCGCACACTGAGTACACCTTCTGCGTGACCTCGCTGCGCAACAGCCGCCGCTTCAACCACACCT
GCCTGACCTTCACCACGCGGGACCCCGTCCCCGGAGACTTGGCGCCCAGCACCTCCACCACCACCCACTA
CATCATGACCATCCTGGGCTGCCTCTTTGGCATGGTTATCGTGCTGGGAGCCGTGTACTACTGCCTGCGC
AAGCGGCGCATGCAGGAGGAGAAGCAGAAGTCTGTCAACGTCAAGAAGACCATCCTGGAGATGCGCTACG
GGGCTGATGTGGATGCCGGCTCCATTGTGCACGCCGCCCAGAAGCTGGGCGAGCCTCCCGTGCTGCCCGT
ATCTCGCATGGCCTCCATCCCCTCCATGATCGGGGAGAAGCTGCCCACCGCCAAGGGGTTGGAGGCCGGG
CTGGACACACCCAAGGTAGCCACCAAAGGCAACTATATCGAGGTGCGCACAGGCGCCGGCGGGGACGGTC
TGGCTCGGCCCGAGGATGACCTCCCGGACCTCGAGAACGGCCAGGGCTCGGCTGCAGAGATCTCCACCAT
TGCCAAGGAGGTGGACAAGGTCAACCAGATCATTAACAACTGCATCGATGCTCTCAAGCTGGACTCGGCC
TCTTTTCTGGGAGGCGGCAGCAGCAGTGGGGACCCCGAGCTGGCCTTCGAGTGCCAGTCCCTCCCTGCAG
CTGCTGCCGCCTCCTCAGCCACTGGCCCCGGGGCCCTGGAGCGGCCCAGCTTCCTTTCGCCTCCCTACAA
GGAGAGCTCCCACCACCCACTACAGCGCCAGCTGAGCGCCGACGCGGCCGTGACCCGCAAGACCTGCAGC
GTGTCGTCCAGTGGTTCCATCAAGAGCGCCAAGGTCTTTAGCCTGGACGTGCCCGACCATCCGGCCGCCA
CAGGGCTGGCTAAGGGCGACTCCAAGTACATCGAGAAGGGCAGCCCCCTCAACAGCCCGCTGGACCGGCT
CCCGCTGGTGCCGGCGGGCAGCGGCGGGGGCAGCGGCGGGGGCGGGGGCATCCACCACCTGGAGGTGAAG
CCGGCCTACCACTGCAGCGAGCACCGGCACAGCTTTCCCGCCCTGTACTACGAGGAGGGTGCCGACAGCC
TGAGCCAGCGCGTGTCCTTCCTCAAGCCGCTGACCCGCTCCAAGCGTGACTCCACCTACTCGCAGCTCTC
CCCCAGACACTACTACTCAGGGTACTCCTCCAGCCCCGAGTACTCATCCGAGAGCACGCACAAGATCTGG
GAGCGCTTCCGGCCCTACAAGAAGCACCACCGGGAGGAGGTGTACATGGCCGCCGGTCACGCCCTGCGCA
AGAAGGTCCAGTTCGCCAAGGACGAGGATCTGCATGACATCCTTGATTACTGGAAGGGGGTCTCCGCCCA
GCAGAAGCTGTGA

Translation (820 aa):
MLRLGLCAAALLCVCRPGAVRADCWLIEGDKGYVWLAICSQNQPPYETIPQHINSTVHDLRLNENKLKAV
LYSSLNRFGNLTDLNLTKNEISYIEDGAFLGQSSLQVLQLGYNKLSNLTEGMLRGMSRLQFLFVQHNLIE
VVTPTAFSECPSLISIDLSSNRLSRLDGATFASLASLMVCELAGNPFNCECDLFGFLAWLVVFNNVTKNY
DRLQCESPREFAGYPLLVPRPYHSLNAITVLQAKCRNGSLPARPVSHPTPYSTDAQREPDENSGFNPDEI
LSVEPPASSTTDASAGPAIKLHHVTFTSATLVVIIPHPYSKMYILVQYNNSYFSDVMTLKNKKEIVTLDK
LRAHTEYTFCVTSLRNSRRFNHTCLTFTTRDPVPGDLAPSTSTTTHYIMTILGCLFGMVIVLGAVYYCLR
KRRMQEEKQKSVNVKKTILEMRYGADVDAGSIVHAAQKLGEPPVLPVSRMASIPSMIGEKLPTAKGLEAG
LDTPKVATKGNYIEVRTGAGGDGLARPEDDLPDLENGQGSAAEISTIAKEVDKVNQIINNCIDALKLDSA
SFLGGGSSSGDPELAFECQSLPAAAAASSATGPGALERPSFLSPPYKESSHHPLQRQLSADAAVTRKTCS
VSSSGSIKSAKVFSLDVPDHPAATGLAKGDSKYIEKGSPLNSPLDRLPLVPAGSGGGSGGGGGIHHLEVK
PAYHCSEHRHSFPALYYEEGADSLSQRVSFLKPLTRSKRDSTYSQLSPRHYYSGYSSSPEYSSESTHKIW
ERFRPYKKHHREEVYMAAGHALRKKVQFAKDEDLHDILDYWKGVSAQQKL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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