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Report for CCDS45954.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45954.2 Public Homo sapiens 19 PRAM1 24 110 108 CCDS HistoryNCBI Gene:84106Re-query CCDS DB by CCDS ID:45954.2Re-query CCDS DB by GeneID:84106See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 45954.1
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45954.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000423345.5 ENSP00000408342.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000423345.5Link to Ensembl Protein Viewer:ENSP00000408342.2Re-query CCDS DB by Nucleotide ID:ENST00000423345Re-query CCDS DB by Protein ID:ENSP00000408342
Original member Current member NCBI NM_032152.5 NP_115528.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032152.5Link to Protein Sequence:NP_115528.4Re-query CCDS DB by Nucleotide ID:NM_032152Re-query CCDS DB by Protein ID:NP_115528Link to BLAST:NP_115528.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115528.4 670 Q96QH2 670 100% 0 0

Chromosomal Locations for CCDS 45954.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8490189 8490226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8490338 8490372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8490476 8490509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8490594 8490756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8490887 8490995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8491100 8491157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8497764 8497840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8498223 8498289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8498376 8499780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8502565 8502591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGCCCATCACCTGCCTGCAGCCATGGAGAGCCATCAGGACTTCCGGAGCATCAAAGCAAAGTTCCAGG
CCTCTCAGCCGGAGCCCAGCGACCTGCCCAAAAAACCTCCGAAGCCTGAGTTTGGTAAACTGAAGAAGTT
CTCCCAGCCTGAGCTAAGCGAGCACCCCAAGAAGGCCCCGCTGCCTGAGTTTGGTGCAGTGTCCTTGAAG
CCCCCGCCGCCTGAGGTCACTGACCTCCCCAAGAAGCCCCCGCCGCCTGAGGTCACTGACCTCCCCAAGA
AGCCCCCGCCGCCTGAGGTCACTGACCTCCCCAAGAAGCCCCCGCCGCCTGAGGTCACTGACCTCCCCAA
GAAGCCGTCCAAACTGGAGTTGAGTGACCTCTCCAAGAAGTTCCCACAGCTGGGGGCCACTCCGTTTCCA
AGGAAGCCCCTGCAGCCTGAGGTCGGTGAGGCCCCTTTGAAGGCCTCGCTGCCGGAGCCTGGTGCGCCGG
CCCGGAAACCCCTGCAGCCCGACGAACTCAGTCACCCCGCCAGACCCCCCTCCGAACCCAAATCCGGCGC
ATTCCCCAGGAAGCTCTGGCAACCCGAGGCCGGTGAGGCTACCCCGAGGTCCCCGCAGCCTGAGTTGAGT
ACCTTTCCCAAGAAGCCTGCGCAGCCTGAGTTCAACGTGTACCCCAAAAAGCCTCCGCAGCCTCAGGTCG
GTGGCCTCCCTAAGAAGTCCGTGCCGCAGCCTGAGTTCAGCGAGGCCGCTCAGACTCCCCTCTGGAAGCC
TCAGTCCAGCGAGCCGAAGCGCGACTCCAGCGCCTTTCCCAAAAAGGCCTCCCAGCCTCCGCTGAGTGAC
TTTCCCAAGAAGCCTCCGCAGCCTGAGCTTGGGGACCTCACCAGGACCTCCTCAGAGCCCGAAGTCAGCG
TGCTTCCCAAGAGGCCGCGGCCGGCCGAATTCAAAGCGCTCTCCAAGAAGCCCCCGCAGCCCGAGCTGGG
CGGCCTCCCCAGGACCTCCTCAGAGCCCGAGTTCAACTCACTCCCCAGGAAGCTGCTGCAGCCGGAGCGC
CGGGGGCCACCCCGCAAGTTCTCACAGCCTGAGCCCAGCGCTGTCCTCAAGAGACACCCGCAGCCTGAGT
TCTTCGGTGATCTCCCTCGAAAGCCTCCACTCCCCAGCTCCGCTTCCGAGAGCTCACTGCCTGCGGCCGT
GGCCGGCTTCAGCTCCCGGCACCCGCTCAGCCCTGGGTTTGGAGCGGCTGGGACACCCCGCTGGAGGTCA
GGAGGCCTGGTTCACAGTGGAGGGGCCAGGCCAGGCCTCAGACCCAGCCATCCACCCCGGCGGAGGCCTC
TGCCCCCTGCCAGCAGCCTGGGACACCCTCCAGCCAAGCCCCCGCTGCCCCCGGGGCCCGTGGATATGCA
GAGCTTTCGGAGACCCTCTGCAGCATCCATAGATCTACGGAGGACCCGCTCGGCCGCTGGGCTCCACTTC
CAGGACCGACAGCCTGAAGACATCCCGCAGGTCCCAGATGAGATCTACGAGCTGTATGACGATGTGGAAC
CCAGAGATGACTCCAGCCCCAGCCCCAAGGGCAGAGATGAAGCGCCCTCAGTTCAGCAAGCCGCCAGGAG
GCCACCACAAGACCCAGCGCTCAGGAAGGAGAAGGATCCCCAGCCACAGCAGTTGCCACCCATGGACCCA
AAGTTGCTGAAGCAGCTGAGGAAGGCAGAGAAGGCCGAGAGGGAGTTCCGGAAGAAGTTCAAGTTTGAAG
GGGAGATCGTGGTTCACACGAAGATGATGATCGACCCCAACGCTAAGACACGTCGCGGGGGTGGCAAGCA
CCTCGGGATCCGGCGCGGGGAGATCCTGGAGGTGATCGAGTTCACCAGCAATGAGGAGATGCTGTGCCGG
GACCCCAAAGGCAAATATGGCTACGTGCCCAGAACAGCGCTCCTGCCCCTGGAGACGGAGGTGTACGATG
ATGTCGACTTCTGCGATCCCCTGGAAAACCAACCACTCCCCCTGGGACGGTAA

Translation (670 aa):
MAHHLPAAMESHQDFRSIKAKFQASQPEPSDLPKKPPKPEFGKLKKFSQPELSEHPKKAPLPEFGAVSLK
PPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPPPPEVTDLPKKPSKLELSDLSKKFPQLGATPFP
RKPLQPEVGEAPLKASLPEPGAPARKPLQPDELSHPARPPSEPKSGAFPRKLWQPEAGEATPRSPQPELS
TFPKKPAQPEFNVYPKKPPQPQVGGLPKKSVPQPEFSEAAQTPLWKPQSSEPKRDSSAFPKKASQPPLSD
FPKKPPQPELGDLTRTSSEPEVSVLPKRPRPAEFKALSKKPPQPELGGLPRTSSEPEFNSLPRKLLQPER
RGPPRKFSQPEPSAVLKRHPQPEFFGDLPRKPPLPSSASESSLPAAVAGFSSRHPLSPGFGAAGTPRWRS
GGLVHSGGARPGLRPSHPPRRRPLPPASSLGHPPAKPPLPPGPVDMQSFRRPSAASIDLRRTRSAAGLHF
QDRQPEDIPQVPDEIYELYDDVEPRDDSSPSPKGRDEAPSVQQAARRPPQDPALRKEKDPQPQQLPPMDP
KLLKQLRKAEKAEREFRKKFKFEGEIVVHTKMMIDPNAKTRRGGGKHLGIRRGEILEVIEFTSNEEMLCR
DPKGKYGYVPRTALLPLETEVYDDVDFCDPLENQPLPLGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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