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Report for CCDS259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
259.1 Public Homo sapiens 1 SYF2 24 110 108 CCDS HistoryNCBI Gene:25949Re-query CCDS DB by CCDS ID:259.1Re-query CCDS DB by GeneID:25949See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000236273.9 ENSP00000236273.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000236273.9Link to Ensembl Protein Viewer:ENSP00000236273.4Re-query CCDS DB by Nucleotide ID:ENST00000236273Re-query CCDS DB by Protein ID:ENSP00000236273
Original member Current member NCBI NM_015484.5 NP_056299.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015484.5Link to Protein Sequence:NP_056299.1Re-query CCDS DB by Nucleotide ID:NM_015484Re-query CCDS DB by Protein ID:NP_056299Link to BLAST:NP_056299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056299.1 243 O95926-1 243 100% 0 0

Chromosomal Locations for CCDS 259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 25223266 25223431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25225002 25225100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25227442 25227532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25228118 25228235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25228998 25229123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25232104 25232211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25232444 25232467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGCGGCTATAGCTGCATCCGAGGTGCTGGTGGACAGCGCGGAGGAGGGGTCCCTCGCTGCGGCGGCGG
AGCTGGCCGCTCAGAAGCGCGAACAGAGACTGCGCAAATTCCGGGAGCTGCACCTGATGCGGAATGAAGC
TCGTAAATTAAATCACCAGGAAGTTGTGGAAGAAGATAAAAGACTAAAATTACCTGCAAATTGGGAAGCC
AAAAAAGCTCGTTTGGAGTGGGAACTAAAGGAAGAGGAAAAGAAAAAGGAATGTGCGGCAAGAGGAGAAG
ACTATGAGAAAGTGAAGTTGCTGGAGATCAGTGCAGAAGATGCAGAAAGATGGGAGAGGAAAAAGAAGAG
GAAAAACCCTGATCTGGGATTTTCAGATTATGCTGCTGCCCAGTTACGCCAGTATCATCGGTTGACCAAG
CAGATCAAACCTGACATGGAAACATATGAGAGACTGAGAGAAAAACATGGAGAAGAGTTTTTCCCAACAT
CCAATAGTCTTCTTCATGGAACACATGTGCCTTCCACAGAGGAAATTGACAGGATGGTCATAGATCTGGA
AAAACAGATTGAAAAACGAGACAAATATAGCCGGAGACGTCCTTATAATGATGATGCAGATATCGACTAC
ATTAATGAAAGGAATGCCAAATTCAACAAGAAAGCTGAAAGATTCTATGGGAAATACACAGCTGAAATTA
AACAGAATTTGGAAAGAGGAACAGCTGTCTAA

Translation (243 aa):
MAAIAASEVLVDSAEEGSLAAAAELAAQKREQRLRKFRELHLMRNEARKLNHQEVVEEDKRLKLPANWEA
KKARLEWELKEEEKKKECAARGEDYEKVKLLEISAEDAERWERKKKRKNPDLGFSDYAAAQLRQYHRLTK
QIKPDMETYERLREKHGEEFFPTSNSLLHGTHVPSTEEIDRMVIDLEKQIEKRDKYSRRRPYNDDADIDY
INERNAKFNKKAERFYGKYTAEIKQNLERGTAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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