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Report for CCDS9495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9495.1 Public Homo sapiens 13 ZIC2 24 110 108 CCDS HistoryNCBI Gene:7546Re-query CCDS DB by CCDS ID:9495.1Re-query CCDS DB by GeneID:7546See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9495.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376335.8 ENSP00000365514.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376335.8Link to Ensembl Protein Viewer:ENSP00000365514.3Re-query CCDS DB by Nucleotide ID:ENST00000376335Re-query CCDS DB by Protein ID:ENSP00000365514
Original member Current member NCBI NM_007129.5 NP_009060.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007129.5Link to Protein Sequence:NP_009060.2Re-query CCDS DB by Nucleotide ID:NM_007129Re-query CCDS DB by Protein ID:NP_009060Link to BLAST:NP_009060.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009060.2 532 O95409 532 100% 0 0

Chromosomal Locations for CCDS 9495.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 99982065 99983139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99984946 99985109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 99985323 99985682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGCTCCTGGACGCGGGTCCGCAGTTCCCGGCCATCGGGGTGGGCAGCTTCGCGCGCCACCATCACCACT
CCGCCGCGGCGGCGGCGGCGGCTGCCGCCGAGATGCAGGACCGTGAACTGAGCCTGGCGGCGGCGCAGAA
CGGCTTCGTTGACTCCGCCGCCGCGCACATGGGAGCCTTCAAGCTCAACCCGGGCGCGCACGAGCTGTCC
CCGGGCCAGAGCTCGGCGTTCACGTCGCAGGGCCCCGGCGCCTACCCCGGCTCCGCTGCGGCTGCCGCTG
CGGCCGCAGCGCTCGGGCCCCACGCCGCGCACGTTGGCTCCTACTCTGGGCCGCCCTTCAACTCCACCCG
GGACTTCCTGTTCCGCAGCCGCGGCTTCGGGGACTCGGCGCCGGGCGGCGGGCAGCACGGGCTGTTCGGG
CCGGGCGCGGGCGGCCTGCACCACGCGCACTCGGACGCGCAGGGCCACCTCCTCTTCCCGGGCCTGCCAG
AGCAGCACGGGCCGCACGGCTCGCAGAATGTGCTCAACGGGCAGATGCGCCTCGGGCTGCCCGGCGAGGT
GTTCGGGCGCTCGGAGCAATACCGCCAGGTGGCCAGCCCGCGGACCGACCCCTACTCGGCGGCGCAACTC
CACAACCAGTACGGCCCCATGAATATGAACATGGGTATGAACATGGCAGCAGCCGCGGCCCACCACCACC
ACCACCACCACCACCACCCCGGTGCCTTTTTCCGCTATATGCGGCAGCAGTGCATCAAGCAGGAGCTAAT
CTGCAAGTGGATCGACCCCGAGCAACTGAGCAATCCCAAGAAGAGCTGCAACAAAACTTTCAGCACCATG
CACGAGCTGGTGACACACGTCTCGGTGGAGCACGTCGGCGGCCCGGAGCAGAGCAACCACGTCTGCTTCT
GGGAGGAGTGTCCGCGCGAGGGCAAGCCCTTCAAGGCCAAATACAAACTGGTCAACCACATCCGCGTGCA
CACAGGCGAGAAACCCTTCCCCTGCCCCTTCCCGGGCTGTGGCAAAGTCTTCGCGCGCTCCGAGAACCTC
AAGATCCACAAAAGGACCCACACAGGGGAGAAGCCGTTCCAGTGTGAGTTTGAGGGCTGCGACCGGCGCT
TCGCCAACAGCAGCGACAGGAAGAAGCACATGCACGTCCACACCTCCGATAAGCCCTATCTCTGCAAGAT
GTGCGACAAGTCCTACACGCACCCCAGCTCGCTGCGGAAGCACATGAAGGTCCATGAGTCCTCCCCGCAG
GGCTCTGAATCCTCCCCGGCCGCCAGCTCCGGCTATGAGTCGTCCACGCCCCCGGGGCTGGTGTCCCCCA
GCGCCGAGCCCCAGAGCAGCTCCAACCTGTCCCCAGCGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGGC
GGCGGCCGCGGTGTCCGCGGTGCACCGGGGCGGAGGCTCGGGCAGTGGCGGCGCGGGAGGCGGCTCAGGC
GGCGGCAGCGGCAGTGGCGGGGGCGGCGGCGGGGCGGGCGGCGGGGGCGGCGGCAGCTCTGGCGGGGGCA
GCGGGACAGCCGGGGGTCACAGCGGCCTCTCCTCCAACTTCAATGAATGGTACGTGTGA

Translation (532 aa):
MLLDAGPQFPAIGVGSFARHHHHSAAAAAAAAAEMQDRELSLAAAQNGFVDSAAAHMGAFKLNPGAHELS
PGQSSAFTSQGPGAYPGSAAAAAAAAALGPHAAHVGSYSGPPFNSTRDFLFRSRGFGDSAPGGGQHGLFG
PGAGGLHHAHSDAQGHLLFPGLPEQHGPHGSQNVLNGQMRLGLPGEVFGRSEQYRQVASPRTDPYSAAQL
HNQYGPMNMNMGMNMAAAAAHHHHHHHHHPGAFFRYMRQQCIKQELICKWIDPEQLSNPKKSCNKTFSTM
HELVTHVSVEHVGGPEQSNHVCFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENL
KIHKRTHTGEKPFQCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSPQ
GSESSPAASSGYESSTPPGLVSPSAEPQSSSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSG
GGSGSGGGGGGAGGGGGGSSGGGSGTAGGHSGLSSNFNEWYV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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