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Report for CCDS8887.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8887.2 Public Homo sapiens 12 TMT1B 24 110 108 CCDS HistoryNCBI Gene:196410Re-query CCDS DB by CCDS ID:8887.2Re-query CCDS DB by GeneID:196410See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 8887.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data. The update adds a predicted signal peptide to the protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8887.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394252.4 ENSP00000377796.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394252.4Link to Ensembl Protein Viewer:ENSP00000377796.3Re-query CCDS DB by Nucleotide ID:ENST00000394252Re-query CCDS DB by Protein ID:ENSP00000377796
Original member Current member NCBI NM_152637.3 NP_689850.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152637.3Link to Protein Sequence:NP_689850.2Re-query CCDS DB by Nucleotide ID:NM_152637Re-query CCDS DB by Protein ID:NP_689850Link to BLAST:NP_689850.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689850.2 244 Q6UX53 244 100% 0 0

Chromosomal Locations for CCDS 8887.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55681755 55682252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55683813 55684049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGACATCCTGGTCCCACTCCTGCAGCTGCTGGTGCTGCTTCTTACCCTGCCCCTGCACCTCATGGCTC
TGCTGGGCTGCTGGCAGCCCCTGTGCAAAAGCTACTTCCCCTACCTGATGGCCGTGCTGACTCCCAAGAG
CAACCGCAAGATGGAGAGCAAGAAACGGGAGCTCTTCAGCCAGATAAAGGGGCTTACAGGAGCCTCCGGG
AAAGTGGCCCTACTGGAGCTGGGCTGCGGAACCGGAGCCAACTTTCAGTTCTACCCACCGGGCTGCAGGG
TCACCTGCCTAGACCCAAATCCCCACTTTGAGAAGTTCCTGACAAAGAGCATGGCTGAGAACAGGCACCT
CCAATATGAGCGGTTTGTGGTGGCTCCTGGAGAGGACATGAGACAGCTGGCTGATGGCTCCATGGATGTG
GTGGTCTGCACTCTGGTGCTGTGCTCTGTGCAGAGCCCAAGGAAGGTCCTGCAGGAGGTCCGGAGAGTAC
TGAGACCGGGAGGTGTGCTCTTTTTCTGGGAGCATGTGGCAGAACCATATGGAAGCTGGGCCTTCATGTG
GCAGCAAGTTTTCGAGCCCACCTGGAAACACATTGGGGATGGCTGCTGCCTCACCAGAGAGACCTGGAAG
GATCTTGAGAACGCCCAGTTCTCCGAAATCCAAATGGAACGACAGCCCCCTCCCTTGAAGTGGCTACCTG
TTGGGCCCCACATCATGGGAAAGGCTGTCAAATAA

Translation (244 aa):
MDILVPLLQLLVLLLTLPLHLMALLGCWQPLCKSYFPYLMAVLTPKSNRKMESKKRELFSQIKGLTGASG
KVALLELGCGTGANFQFYPPGCRVTCLDPNPHFEKFLTKSMAENRHLQYERFVVAPGEDMRQLADGSMDV
VVCTLVLCSVQSPRKVLQEVRRVLRPGGVLFFWEHVAEPYGSWAFMWQQVFEPTWKHIGDGCCLTRETWK
DLENAQFSEIQMERQPPPLKWLPVGPHIMGKAVK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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