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Report for CCDS3245.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3245.2 Public Homo sapiens 3 KLHL6 24 110 108 CCDS HistoryNCBI Gene:89857Re-query CCDS DB by CCDS ID:3245.2Re-query CCDS DB by GeneID:89857See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3245.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341319.8 ENSP00000341342.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341319.8Link to Ensembl Protein Viewer:ENSP00000341342.3Re-query CCDS DB by Nucleotide ID:ENST00000341319Re-query CCDS DB by Protein ID:ENSP00000341342
Original member Current member NCBI NM_130446.4 NP_569713.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130446.4Link to Protein Sequence:NP_569713.2Re-query CCDS DB by Nucleotide ID:NM_130446Re-query CCDS DB by Protein ID:NP_569713Link to BLAST:NP_569713.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_569713.2 621 Q8WZ60 621 100% 0 0

Chromosomal Locations for CCDS 3245.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 183491927 183492228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183492494 183492707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183494079 183494281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183499590 183499827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183508059 183508508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183527845 183528010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 183555361 183555653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1866 nt):
ATGTTGATGGCAGGACAAAGGGGCGCCTGGACCATGGGTGATGTGGTCGAGAAGAGTTTGGAAGGGCCCC
TGGCACCTTCTACAGATGAGCCCTCCCAGAAAACAGGAGACTTGGTCGAGATCTTAAATGGGGAAAAGGT
CAAATTTGACGACGCGGGACTCTCCTTAATTCTTCAGAATGGCCTGGAAACCCTGCGAATGGAAAACGCT
CTGACAGATGTCATCTTGTGTGTGGACATTCAGGAATTCTCCTGCCACCGCGTGGTGCTTGCCGCAGCCA
GCAACTATTTCAGGGCCATGTTCTGCAACGATTTAAAGGAAAAGTATGAGAAAAGGATCATTATTAAAGG
GGTTGATGCTGAGACCATGCACACTCTGTTGGACTACACGTACACCAGCAAGGCGCTGATCACCAAGCAG
AATGTCCAGCGGGTCCTGGAGGCTGCTAACCTCTTCCAGTTCCTGCGGATGGTGGATGCCTGTGCCAGCT
TCCTCACTGAAGCCTTGAACCCAGAAAACTGCGTTGGAATACTGAGGCTGGCTGACACACACTCGCTGGA
CAGTCTAAAGAAGCAGGTTCAGAGTTACATCATTCAAAACTTTGTGCAGATTCTGAACTCTGAGGAGTTT
CTTGACCTGCCCGTGGACACTCTGCACCACATCTTGAAGAGTGATGACCTTTACGTGACCGAGGAGGCTC
AGGTGTTTGAGACCGTGATGAGCTGGGTCCGGCACAAGCCATCAGAACGACTCTGCTTACTCCCCTATGT
CCTCGAGAACGTGCGCTTACCGCTTCTGGACCCGTGGTACTTTGTGGAGACGGTGGAAGCAGATCCTCTC
ATCAGGCAGTGCCCAGAGGTCTTCCCGCTGCTCCAGGAAGCCAGGATGTACCACCTTTCTGGCAATGAGA
TCATTTCGGAACGCACCAAGCCCAGGATGCATGAGTTCCAGTCTGAGGTGTTCATGATCATTGGCGGCTG
CACGAAGGATGAACGGTTTGTGGCAGAGGTGACCTGCCTGGACCCCCTGAGGCGCAGCCGCCTGGAGGTG
GCCAAGCTCCCGCTAACAGAGCATGAGCTGGAGAGTGAGAATAAGAAGTGGGTGGAGTTTGCATGCGTGA
CATTGAAAAATGAGGTCTACATCTCAGGTGGCAAAGAAACACAGCATGATGTTTGGAAATATAATTCTTC
GATCAACAAGTGGATTCAGATTGAGTATTTAAACATAGGCCGCTGGAGGCATAAGATGGTGGTGTTGGGT
GGCAAGGTCTATGTGATCGGAGGCTTTGACGGCTTACAGAGAATCAACAATGTGGAGACCTACGACCCCT
TTCACAACTGCTGGTCAGAGGCCGCACCCCTCCTTGTCCATGTCAGTTCCTTTGCAGCCACCAGCCATAA
GAAGAAGCTGTATGTGATCGGGGGAGGGCCCAATGGGAAACTGGCCACAGACAAGACTCAGTGTTATGAC
CCTTCCACCAACAAGTGGAGTTTGAAGGCGGCCATGCCCGTGGAGGCTAAATGCATCAATGCAGTGAGTT
TCCGGGACCGCATCTATGTCGTTGGTGGGGCCATGAGAGCGCTGTACGCCTACAGCCCGCTGGAAGACAG
CTGGTGCCTGGTGACCCAGCTCAGCCACGAGCGGGCCAGCTGCGGTATCGCGCCCTGCAACAACCGGCTC
TACATCACCGGCGGGCGGGACGAGAAGAACGAGGTTATCGCCACGGTGCTGTGCTGGGACCCCGAGGCCC
AGAAACTGACAGAGGAGTGCGTCCTGCCCCGGGGCGTGTCGCACCACGGCAGCGTCACCATCAGGAAGTC
GTACACCCACATCCGCAGGATCGTGCCCGGAGCAGTGTCTGTCTGA

Translation (621 aa):
MLMAGQRGAWTMGDVVEKSLEGPLAPSTDEPSQKTGDLVEILNGEKVKFDDAGLSLILQNGLETLRMENA
LTDVILCVDIQEFSCHRVVLAAASNYFRAMFCNDLKEKYEKRIIIKGVDAETMHTLLDYTYTSKALITKQ
NVQRVLEAANLFQFLRMVDACASFLTEALNPENCVGILRLADTHSLDSLKKQVQSYIIQNFVQILNSEEF
LDLPVDTLHHILKSDDLYVTEEAQVFETVMSWVRHKPSERLCLLPYVLENVRLPLLDPWYFVETVEADPL
IRQCPEVFPLLQEARMYHLSGNEIISERTKPRMHEFQSEVFMIIGGCTKDERFVAEVTCLDPLRRSRLEV
AKLPLTEHELESENKKWVEFACVTLKNEVYISGGKETQHDVWKYNSSINKWIQIEYLNIGRWRHKMVVLG
GKVYVIGGFDGLQRINNVETYDPFHNCWSEAAPLLVHVSSFAATSHKKKLYVIGGGPNGKLATDKTQCYD
PSTNKWSLKAAMPVEAKCINAVSFRDRIYVVGGAMRALYAYSPLEDSWCLVTQLSHERASCGIAPCNNRL
YITGGRDEKNEVIATVLCWDPEAQKLTEECVLPRGVSHHGSVTIRKSYTHIRRIVPGAVSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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