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Report for CCDS14253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14253.1 Public Homo sapiens X CXorf38 24 110 108 CCDS HistoryNCBI Gene:159013Re-query CCDS DB by CCDS ID:14253.1Re-query CCDS DB by GeneID:159013See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327877.10 ENSP00000330488.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327877.10Link to Ensembl Protein Viewer:ENSP00000330488.5Re-query CCDS DB by Nucleotide ID:ENST00000327877Re-query CCDS DB by Protein ID:ENSP00000330488
Original member Current member NCBI NM_144970.3 NP_659407.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144970.3Link to Protein Sequence:NP_659407.1Re-query CCDS DB by Nucleotide ID:NM_144970Re-query CCDS DB by Protein ID:NP_659407Link to BLAST:NP_659407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659407.1 319 Q8TB03-1 319 100% 0 0

Chromosomal Locations for CCDS 14253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 40630615 40630773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 40636533 40636712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 40637007 40637156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 40639009 40639128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 40647007 40647141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 40647305 40647520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGTGCTGTCGGAGCTAGCGGCGCGCCTCAACTGCGCCGAGTACAAGAACTGGGTGAAGGCGGGCCACT
GCCTGTTACTGCTGCGCAGCTGCCTGCAGGGTTTCGTCGGCCGCGAGGTGCTCTCCTTCCACCGCGGCCT
ACTCGCCGCAGCCCCCGGCCTGGGGCCCCGCGCCGTCTGCCGCGGCGGCTCACGGTGCAGCCCTCGCGCC
CGCCAGTTTCAGCCTCAGTGTCAGGTGTGCGCTGAATGGAAAAGGGAGATTTTGAGACATCATGTCAACA
GAAATGGAGATGTGCACTGGGGAAACTGCCGGCCGGGCCGCTGGCCCGTGGACGCCTGGGAGGTGGCCAA
GGCCTTCATGCCCCGAGGACTAGCAGACAAACAAGGACCTGAGGAATGTGATGCAGTTGCTCTTTTAAGT
CTCATCAACTCCTGCGATCACTTCGTGGTTGATCGAAAGAAAGTCACAGAGGTAATTAAATGTCGTAATG
AGATCATGCACTCTTCAGAGATGAAAGTATCTTCTACGTGGCTTCGAGATTTTCAGATGAAGATCCAAAA
TTTTCTGAATGAATTCAAGAACATCCCAGAGATTGTGGCAGTATACTCCAGAATAGAACAGCTGTTGACG
TCTGACTGGGCTGTTCACATCCCCGAGGAAGATCAGCGAGATGGGTGTGAATGTGAAATGGGAACTTACC
TGAGTGAGAGCCAAGTCAATGAAATAGAAATGCAGTTACTAAAGGAGAAACTTCAAGAGATATATCTTCA
AGCAGAAGAACAAGAGGTGTTGCCTGAAGAGCTCTCAAATCGACTGGAAGTGGTGAAGGAATTTCTGAGA
AACAATGAGGATCTTAGAAATGGCCTTACAGAAGATATGCAGAAGCTAGACAGCCTCTGTCTACATCAAA
AACTGGATTCACAGGAACCTGGGAGACAAACACCTGACAGGAAGGCCTGA

Translation (319 aa):
MVLSELAARLNCAEYKNWVKAGHCLLLLRSCLQGFVGREVLSFHRGLLAAAPGLGPRAVCRGGSRCSPRA
RQFQPQCQVCAEWKREILRHHVNRNGDVHWGNCRPGRWPVDAWEVAKAFMPRGLADKQGPEECDAVALLS
LINSCDHFVVDRKKVTEVIKCRNEIMHSSEMKVSSTWLRDFQMKIQNFLNEFKNIPEIVAVYSRIEQLLT
SDWAVHIPEEDQRDGCECEMGTYLSESQVNEIEMQLLKEKLQEIYLQAEEQEVLPEELSNRLEVVKEFLR
NNEDLRNGLTEDMQKLDSLCLHQKLDSQEPGRQTPDRKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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