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Report for CCDS1249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1249.1 Public Homo sapiens 1 MGST3 24 110 108 CCDS HistoryNCBI Gene:4259Re-query CCDS DB by CCDS ID:1249.1Re-query CCDS DB by GeneID:4259See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367884.6 ENSP00000356859.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367884.6Link to Ensembl Protein Viewer:ENSP00000356859.1Re-query CCDS DB by Nucleotide ID:ENST00000367884Re-query CCDS DB by Protein ID:ENSP00000356859
Original member Current member EBI ENST00000367889.8 ENSP00000356864.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367889.8Link to Ensembl Protein Viewer:ENSP00000356864.3Re-query CCDS DB by Nucleotide ID:ENST00000367889Re-query CCDS DB by Protein ID:ENSP00000356864
Original member Current member NCBI NM_004528.4 NP_004519.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004528.4Link to Protein Sequence:NP_004519.1Re-query CCDS DB by Nucleotide ID:NM_004528Re-query CCDS DB by Protein ID:NP_004519Link to BLAST:NP_004519.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004519.1 152 O14880 152 100% 0 0

Chromosomal Locations for CCDS 1249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 165649848 165649964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165651014 165651087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165651978 165652035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165654279 165654351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 165655368 165655504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGCTGTCCTCTCTAAGGAATATGGTTTTGTGCTTCTAACTGGTGCTGCCAGCTTTATAATGGTGGCCC
ACCTAGCCATCAATGTTTCCAAGGCCCGCAAGAAGTACAAAGTGGAGTATCCTATCATGTACAGCACGGA
CCCTGAAAATGGGCACATCTTCAACTGCATTCAGCGAGCCCACCAGAACACGTTGGAAGTGTATCCTCCC
TTCTTATTTTTTCTAGCTGTTGGAGGTGTTTACCACCCGCGTATAGCTTCTGGCCTGGGCTTGGCCTGGA
TTGTTGGACGAGTTCTTTATGCTTATGGCTATTACACGGGAGAACCCAGCAAGCGTAGTCGAGGAGCCCT
GGGGTCCATCGCCCTCCTGGGCTTGGTGGGCACAACTGTGTGCTCTGCTTTCCAGCATCTTGGTTGGGTT
AAAAGTGGCTTGGGCAGTGGACCCAAATGCTGCCATTAA

Translation (152 aa):
MAVLSKEYGFVLLTGAASFIMVAHLAINVSKARKKYKVEYPIMYSTDPENGHIFNCIQRAHQNTLEVYPP
FLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKRSRGALGSIALLGLVGTTVCSAFQHLGWV
KSGLGSGPKCCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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