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Report for CCDS1411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1411.1 Public Homo sapiens 1 TNNI1 24 110 108 CCDS HistoryNCBI Gene:7135Re-query CCDS DB by CCDS ID:1411.1Re-query CCDS DB by GeneID:7135See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336092.8 ENSP00000337022.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336092.8Link to Ensembl Protein Viewer:ENSP00000337022.4Re-query CCDS DB by Nucleotide ID:ENST00000336092Re-query CCDS DB by Protein ID:ENSP00000337022
Original member Current member EBI ENST00000361379.9 ENSP00000354488.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361379.9Link to Ensembl Protein Viewer:ENSP00000354488.4Re-query CCDS DB by Nucleotide ID:ENST00000361379Re-query CCDS DB by Protein ID:ENSP00000354488
Original member Current member EBI ENST00000367312.5 ENSP00000356281.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367312.5Link to Ensembl Protein Viewer:ENSP00000356281.1Re-query CCDS DB by Nucleotide ID:ENST00000367312Re-query CCDS DB by Protein ID:ENSP00000356281
Original member Current member NCBI NM_003281.4 NP_003272.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003281.4Link to Protein Sequence:NP_003272.3Re-query CCDS DB by Nucleotide ID:NM_003281Re-query CCDS DB by Protein ID:NP_003272Link to BLAST:NP_003272.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003272.3 187 P19237 187 100% 0 0

Chromosomal Locations for CCDS 1411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201410328 201410435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201411357 201411533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201413032 201413121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201414518 201414649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201415213 201415254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201417116 201417119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201417783 201417793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGCCGGAAGTCGAGAGAAAACCCAAGATCACTGCCTCCCGCAAACTCTTGCTGAAGAGCCTGATGCTGG
CCAAGGCCAAGGAATGCTGGGAGCAGGAGCACGAGGAGCGCGAGGCTGAGAAGGTGCGCTACCTGGCAGA
GCGCATCCCCACGCTGCAGACCCGTGGCCTGTCCCTCAGTGCCCTGCAGGACCTGTGCCGGGAGCTGCAC
GCCAAGGTGGAGGTGGTGGATGAGGAGCGATACGACATTGAGGCCAAATGCCTCCACAACACCAGGGAGA
TTAAGGACCTGAAGCTGAAGGTGATGGACCTCCGTGGGAAGTTCAAGCGCCCGCCCCTGCGTCGAGTCCG
TGTCTCGGCTGACGCCATGCTCCGGGCCCTGCTGGGCTCCAAGCACAAGGTGTCCATGGATCTGCGGGCC
AACCTCAAGTCTGTGAAGAAGGAAGACACAGAGAAGGAGCGGCCTGTGGAGGTGGGTGACTGGAGGAAGA
ACGTGGAGGCCATGTCTGGCATGGAAGGCCGGAAGAAGATGTTTGATGCCGCCAAGTCTCCGACCTCACA
ATAG

Translation (187 aa):
MPEVERKPKITASRKLLLKSLMLAKAKECWEQEHEEREAEKVRYLAERIPTLQTRGLSLSALQDLCRELH
AKVEVVDEERYDIEAKCLHNTREIKDLKLKVMDLRGKFKRPPLRRVRVSADAMLRALLGSKHKVSMDLRA
NLKSVKKEDTEKERPVEVGDWRKNVEAMSGMEGRKKMFDAAKSPTSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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