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Report for CCDS35350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35350.1 Public Homo sapiens X BEX5 24 110 108 CCDS HistoryNCBI Gene:340542Re-query CCDS DB by CCDS ID:35350.1Re-query CCDS DB by GeneID:340542See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35350.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333643.4 ENSP00000328030.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333643.4Link to Ensembl Protein Viewer:ENSP00000328030.3Re-query CCDS DB by Nucleotide ID:ENST00000333643Re-query CCDS DB by Protein ID:ENSP00000328030
Original member Current member EBI ENST00000543160.5 ENSP00000446054.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543160.5Link to Ensembl Protein Viewer:ENSP00000446054.1Re-query CCDS DB by Nucleotide ID:ENST00000543160Re-query CCDS DB by Protein ID:ENSP00000446054
Original member Current member NCBI NM_001012978.3 NP_001012996.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012978.3Link to Protein Sequence:NP_001012996.1Re-query CCDS DB by Nucleotide ID:NM_001012978Re-query CCDS DB by Protein ID:NP_001012996Link to BLAST:NP_001012996.1
Original member Current member NCBI NM_001159560.2 NP_001153032.1 Accepted alive Link to Nucleotide Sequence:NM_001159560.2Link to Protein Sequence:NP_001153032.1Re-query CCDS DB by Nucleotide ID:NM_001159560Re-query CCDS DB by Protein ID:NP_001153032Link to BLAST:NP_001153032.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012996.1 111 Q5H9J7 111 100% 0 0
NP_001153032.1 111 Q5H9J7 111 100% 0 0

Chromosomal Locations for CCDS 35350.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102153930 102154265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGGAAAATGTCCCCAAGGAAAACAAAGTTGTGGAGAAGGCCCCAGTGCAGAATGAAGCCCCCGCTTTAG
GAGGTGGTGAATACCAGGAGCCTGGAGGAAATGTTAAAGGGGTTTGGGCTCCACCTGCCCCGGGTTTTGG
AGAGGATGTGCCCAATAGGCTTGTCGATAACATTGATATGATAGATGGAGATGGAGATGATATGGAACGG
TTCATGGAGGAGATGAGAGAGCTAAGGAGGAAAATTAGGGAACTTCAGTTGAGGTACAGTCTGCGCATTC
TTATAGGGGACCCTCCTCACCATGATCATCATGATGAGTTTTGCCTTATGCCTTGA

Translation (111 aa):
MENVPKENKVVEKAPVQNEAPALGGGEYQEPGGNVKGVWAPPAPGFGEDVPNRLVDNIDMIDGDGDDMER
FMEEMRELRRKIRELQLRYSLRILIGDPPHHDHHDEFCLMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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