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Report for CCDS2869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2869.1 Public Homo sapiens 3 RFT1 24 110 108 CCDS HistoryNCBI Gene:91869Re-query CCDS DB by CCDS ID:2869.1Re-query CCDS DB by GeneID:91869See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2869.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296292.8 ENSP00000296292.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296292.8Link to Ensembl Protein Viewer:ENSP00000296292.3Re-query CCDS DB by Nucleotide ID:ENST00000296292Re-query CCDS DB by Protein ID:ENSP00000296292
Original member Current member NCBI NM_052859.4 NP_443091.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052859.4Link to Protein Sequence:NP_443091.1Re-query CCDS DB by Nucleotide ID:NM_052859Re-query CCDS DB by Protein ID:NP_443091Link to BLAST:NP_443091.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443091.1 541 Q96AA3 541 100% 0 0

Chromosomal Locations for CCDS 2869.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 53091903 53092070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53092369 53092618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53099381 53099486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53103953 53104097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53105673 53105803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53106819 53106869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53111830 53111908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53119884 53120021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53121699 53121800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53122374 53122563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53123724 53123840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53125909 53125994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53130338 53130400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGGCAGCCAGGAGGTGCTGGGCCACGCGGCCCGGCTGGCCTCCTCCGGTCTCCTCCTGCAGGTGTTGT
TTCGGTTGATCACCTTTGTCTTGAATGCATTTATTCTTCGCTTCCTGTCAAAGGAAATCGTTGGCGTAGT
AAATGTAAGACTAACGCTGCTTTACTCAACCACCCTCTTCCTGGCCAGAGAGGCCTTCCGCAGAGCATGT
CTCAGTGGGGGCACCCAGCGAGACTGGAGCCAGACCCTCAACCTGCTGTGGCTAACAGTCCCCCTGGGTG
TGTTTTGGTCCTTATTCCTGGGCTGGATCTGGTTGCAGCTGCTTGAAGTGCCTGATCCTAATGTTGTCCC
TCACTATGCAACTGGAGTGGTGCTGTTTGGTCTCTCGGCAGTGGTGGAGCTTCTAGGAGAGCCCTTTTGG
GTCTTGGCACAAGCACATATGTTTGTGAAGCTCAAGGTGATTGCAGAGAGCCTGTCGGTAATTCTTAAGA
GCGTTCTGACAGCTTTTCTCGTGCTGTGGTTGCCTCACTGGGGATTGTACATTTTCTCTTTGGCCCAGCT
TTTCTATACCACAGTTCTGGTGCTCTGCTATGTTATTTATTTCACAAAGTTACTGGGTTCCCCAGAATCA
ACCAAGCTTCAAACTCTTCCTGTCTCCAGAATAACAGATCTGTTACCCAATATTACAAGAAATGGAGCGT
TTATAAACTGGAAAGAGGCTAAACTGACTTGGAGTTTTTTCAAACAGTCTTTCTTGAAACAGATTTTGAC
AGAAGGCGAGCGATATGTGATGACATTTTTGAATGTATTGAACTTTGGTGATCAGGGTGTGTATGATATA
GTGAATAATCTTGGCTCCCTTGTGGCCAGATTAATTTTCCAGCCAATAGAGGAAAGTTTTTATATATTTT
TTGCTAAGGTGCTGGAGAGGGGAAAGGATGCCACACTTCAGAAGCAGGAGGACGTTGCTGTGGCTGCTGC
AGTCTTGGAGTCCCTGCTCAAGCTGGCCCTGCTGGCCGGCCTGACCATCACTGTTTTTGGCTTTGCCTAT
TCTCAGCTGGCTCTGGATATCTACGGAGGGACCATGCTTAGCTCAGGATCCGGTCCTGTTTTGCTGCGTT
CCTACTGTCTCTATGTTCTCCTGCTTGCCATCAATGGAGTGACAGAGTGTTTCACATTTGCTGCCATGAG
CAAAGAGGAGGTCGACAGGTACAATTTTGTGATGCTGGCCCTGTCCTCCTCATTCCTGGTGTTATCCTAT
CTCTTGACCCGTTGGTGTGGCAGCGTGGGCTTCATCTTGGCCAACTGCTTTAACATGGGCATTCGGATCA
CGCAGAGCCTTTGCTTCATCCACCGCTACTACCGAAGGAGCCCCCACAGGCCCCTGGCTGGCCTGCACCT
ATCGCCAGTCCTGCTCGGGACATTTGCCCTCAGTGGTGGGGTTACTGCTGTTTCGGAGGTATTCCTCTGC
TGTGAGCAGGGCTGGCCAGCCAGACTGGCACACATTGCTGTGGGGGCCTTCTGTCTGGGAGCAACTCTCG
GGACAGCATTCCTCACAGAGACCAAGCTGATCCATTTCCTCAGGACTCAGTTAGGTGTGCCCAGACGCAC
TGACAAAATGACATGA

Translation (541 aa):
MGSQEVLGHAARLASSGLLLQVLFRLITFVLNAFILRFLSKEIVGVVNVRLTLLYSTTLFLAREAFRRAC
LSGGTQRDWSQTLNLLWLTVPLGVFWSLFLGWIWLQLLEVPDPNVVPHYATGVVLFGLSAVVELLGEPFW
VLAQAHMFVKLKVIAESLSVILKSVLTAFLVLWLPHWGLYIFSLAQLFYTTVLVLCYVIYFTKLLGSPES
TKLQTLPVSRITDLLPNITRNGAFINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDI
VNNLGSLVARLIFQPIEESFYIFFAKVLERGKDATLQKQEDVAVAAAVLESLLKLALLAGLTITVFGFAY
SQLALDIYGGTMLSSGSGPVLLRSYCLYVLLLAINGVTECFTFAAMSKEEVDRYNFVMLALSSSFLVLSY
LLTRWCGSVGFILANCFNMGIRITQSLCFIHRYYRRSPHRPLAGLHLSPVLLGTFALSGGVTAVSEVFLC
CEQGWPARLAHIAVGAFCLGATLGTAFLTETKLIHFLRTQLGVPRRTDKMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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