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Report for CCDS5213.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5213.1 Public Homo sapiens 6 UST 24 110 108 CCDS HistoryNCBI Gene:10090Re-query CCDS DB by CCDS ID:5213.1Re-query CCDS DB by GeneID:10090See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5213.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367463.5 ENSP00000356433.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367463.5Link to Ensembl Protein Viewer:ENSP00000356433.4Re-query CCDS DB by Nucleotide ID:ENST00000367463Re-query CCDS DB by Protein ID:ENSP00000356433
Original member Current member NCBI NM_005715.3 NP_005706.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005715.3Link to Protein Sequence:NP_005706.1Re-query CCDS DB by Nucleotide ID:NM_005715Re-query CCDS DB by Protein ID:NP_005706Link to BLAST:NP_005706.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005706.1 406 Q9Y2C2 406 100% 0 0

Chromosomal Locations for CCDS 5213.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 148747431 148747677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148886986 148887029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148941279 148941434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148953872 148953951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148964410 148964563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149019139 149019236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149021324 149021481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149073833 149074116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGAAGAAGAAGCAGCAGCATCCCGGCGGCGGCGCGGATCCCTGGCCCCATGGGGCCCCTATGGGGGGCG
CCCCTCCGGGCCTGGGCAGCTGGAAGCGTCGGGTGCCCCTGCTGCCTTTCCTGCGCTTCTCCCTCCGGGA
CTACGGCTTCTGCATGGCCACCCTGCTGGTCTTCTGCCTGGGCTCCCTCCTCTATCAGCTCAGCGGGGGA
CCCCCTCGCTTCCTGCTCGACCTGCGGCAGTACTTGGGAAATTCCACTTACTTGGATGACCATGGACCAC
CTCCTAGTAAGGTACTACCTTTCCCAAGCCAGGTGGTGTACAACAGGGTAGGCAAGTGTGGGAGCCGTAC
TGTGGTCTTGCTTCTGAGAATCTTGTCGGAGAAGCACGGATTTAATTTGGTCACATCAGACATTCACAAC
AAAACCAGGCTTACTAAAAATGAACAAATGGAACTGATTAAAAATATAAGTACTGCCGAACAACCCTATT
TATTCACTCGACATGTTCATTTCCTCAACTTCTCAAGGTTTGGAGGAGACCAGCCTGTCTACATCAACAT
CATTAGAGACCCCGTCAACCGGTTCTTATCCAACTATTTTTTCCGTCGCTTTGGAGACTGGAGAGGGGAA
CAAAATCACATGATCCGCACCCCCAGCATGAGGCAGGAGGAGCGCTACCTGGATATCAATGAGTGTATTC
TTGAAAACTATCCCGAGTGCTCCAACCCCAGGTTATTTTACATCATTCCGTACTTTTGTGGACAGCATCC
CAGATGCAGGGAGCCTGGTGAATGGGCCCTTGAGAGAGCAAAGCTGAACGTGAATGAAAACTTCCTGCTC
GTGGGGATTCTTGAAGAGTTGGAAGATGTGCTGCTGTTACTGGAAAGATTTTTACCTCATTACTTCAAGG
GCGTGCTCAGTATCTACAAAGACCCAGAGCACAGGAAGCTTGGAAACATGACTGTGACGGTGAAGAAGAC
TGTCCCCTCTCCTGAGGCTGTGCAGATCCTCTACCAGCGGATGAGATACGAGTACGAGTTTTACCACTAC
GTCAAAGAGCAGTTCCACCTGCTGAAGCGCAAGTTTGGACTTAAGTCTCACGTCAGCAAGCCCCCCCTGA
GGCCACACTTCTTTATCCCAACTCCACTGGAAACCGAGGAGCCAATCGACGATGAAGAACAGGATGATGA
AAAGTGGCTGGAAGATATTTATAAGAGGTGA

Translation (406 aa):
MKKKQQHPGGGADPWPHGAPMGGAPPGLGSWKRRVPLLPFLRFSLRDYGFCMATLLVFCLGSLLYQLSGG
PPRFLLDLRQYLGNSTYLDDHGPPPSKVLPFPSQVVYNRVGKCGSRTVVLLLRILSEKHGFNLVTSDIHN
KTRLTKNEQMELIKNISTAEQPYLFTRHVHFLNFSRFGGDQPVYINIIRDPVNRFLSNYFFRRFGDWRGE
QNHMIRTPSMRQEERYLDINECILENYPECSNPRLFYIIPYFCGQHPRCREPGEWALERAKLNVNENFLL
VGILEELEDVLLLLERFLPHYFKGVLSIYKDPEHRKLGNMTVTVKKTVPSPEAVQILYQRMRYEYEFYHY
VKEQFHLLKRKFGLKSHVSKPPLRPHFFIPTPLETEEPIDDEEQDDEKWLEDIYKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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