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Report for CCDS54533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54533.1 Public Homo sapiens 22 TNRC6B 24 110 108 CCDS HistoryNCBI Gene:23112Re-query CCDS DB by CCDS ID:54533.1Re-query CCDS DB by GeneID:23112See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454349.7 ENSP00000401946.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000454349.7Link to Ensembl Protein Viewer:ENSP00000401946.2Re-query CCDS DB by Nucleotide ID:ENST00000454349Re-query CCDS DB by Protein ID:ENSP00000401946
Original member Current member NCBI NM_001162501.2 NP_001155973.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001162501.2Link to Protein Sequence:NP_001155973.1Re-query CCDS DB by Nucleotide ID:NM_001162501Re-query CCDS DB by Protein ID:NP_001155973Link to BLAST:NP_001155973.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155973.1 1833 Q9UPQ9-3 1833 100% 0 0

Chromosomal Locations for CCDS 54533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 40178136 40178140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40246015 40246102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40251179 40251200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40261832 40262173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40264688 40267036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40270122 40270280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40273425 40273600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40277077 40277151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40277999 40278044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40279995 40280143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40281119 40281289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40285645 40285770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40300455 40300586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40300910 40301005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40301150 40301333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40308512 40308649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40310817 40310993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40312505 40312651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40312902 40312997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40315283 40315507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40315942 40316012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40321090 40321229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40322854 40323241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5502 nt):
ATGAGAGAGAAGGAGCAAGAAAGGGAAGAACAGTTAATGGAAGACAAGAAAAGGAAGAAAGAGGATAAAA
AGAAAAAAGAAGCCACTCAGAAGGTCACGGAACAAAAAACCAAAGTGCCCGAAGTGACGAAACCAAGTTT
AAGCCAACCAACGGCCGCCAGCCCAATTGGCAGCTCTCCATCGCCACCAGTCAATGGTGGCAACAATGCC
AAAAGGGTGGCAGTGCCGAACGGACAACCGCCAAGCGCCGCCCGCTACATGCCTCGGGAGGTGCCGCCGC
GATTCCGTTGCCAGCAGGACCACAAAGTGTTACTAAAACGTGGGCAGCCCCCTCCACCGTCCTGCATGCT
CCTTGGGGGTGGGGCAGGGCCTCCTCCCTGCACAGCACCTGGAGCAAACCCAAACAACGCACAAGTGACA
GGAGCGCTGCTGCAGAGTGAGAGTGGGACTGCGCCAGACTCAACCCTTGGAGGTGCTGCTGCTTCAAATT
ATGCAAATTCCACTTGGGGCTCGGGAGCCTCCTCCAACAACGGCACCTCCCCCAACCCAATTCACATCTG
GGACAAGGTGATTGTAGACGGGTCTGACATGGAAGAGTGGCCTTGTATTGCCAGCAAAGACACTGAATCT
TCTTCCGAAAACACCACCGATAACAACAGTGCCTCGAACCCTGGCTCTGAGAAGAGCACTCTGCCAGGAA
GCACCACTAGTAACAAAGGAAAAGGGAGCCAGTGCCAGTCTGCAAGTTCTGGGAACGAATGTAATCTTGG
GGTCTGGAAATCTGACCCTAAGGCTAAATCTGTTCAATCTTCCAACTCTACTACAGAGAACAACAATGGA
CTAGGAAATTGGAGGAATGTGAGTGGTCAGGATAGAATTGGACCTGGCTCTGGCTTCAGCAACTTTAACC
CAAATAGCAACCCATCTGCCTGGCCAGCACTGGTCCAAGAAGGAACTTCTAGGAAAGGGGCATTGGAAAC
AGATAATAGTAATTCCAGTGCACAGGTTAGCACAGTAGGTCAGACATCCAGGGAACAGCAGTCAAAGATG
GAAAATGCGGGTGTTAATTTTGTTGTCTCTGGCAGAGAACAGGCTCAAATTCATAACACTGATGGACCAA
AAAATGGAAACACTAACTCCTTGAACTTAAGTTCACCAAACCCCATGGAGAATAAGGGAATGCCCTTTGG
AATGGGCTTGGGGAACACCTCCAGGAGCACTGATGCCCCTTCACAAAGCACTGGAGATCGAAAGACTGGG
AGTGTTGGATCTTGGGGTGCAGCTAGGGGGCCTTCTGGAACTGACACAGTCTCTGGACAAAGCAATTCTG
GAAACAATGGGAACAATGGAAAAGAGAGAGAGGACTCCTGGAAAGGAGCTTCTGTTCAGAAATCAACTGG
GTCAAAAAATGACTCTTGGGACAACAATAACAGGTCTACGGGTGGGTCCTGGAACTTTGGCCCCCAGGAC
TCTAATGACAACAAATGGGGTGAAGGGAACAAAATGACATCTGGGGTCTCTCAGGGAGAATGGAAACAGC
CGACTGGGTCTGATGAGTTGAAAATTGGAGAATGGAGTGGTCCAAACCAACCAAATTCTAGCACTGGAGC
ATGGGACAATCAAAAGGGCCACCCCCTCCCTGAAAACCAAGGCAATGCCCAGGCTCCCTGTTGGGGAAGA
TCTTCCAGCTCCACAGGAAGTGAAGTTGGAGGTCAAAGCACTGGAAGCAACCACAAAGCAGGAAGTAGTG
ACAGTCATAACTCTGGCCGTCGGTCGTACAGGCCCACACATCCTGATTGTCAGGCTGTCTTGCAGACTCT
TTTGAGCCGAACTGATTTGGACCCCAGGGTGCTCTCAAACACTGGCTGGGGCCAAACTCAAATTAAGCAG
GACACAGTGTGGGACATTGAAGAGGTGCCAAGGCCTGAGGGGAAATCTGACAAAGGAACTGAGGGGTGGG
AGAGCGCTGCCACACAGACCAAGAACTCAGGGGGCTGGGGAGATGCACCCAGCCAAAGCAATCAAATGAA
GTCTGGATGGGGGGAGCTCTCAGCCTCTACAGAGTGGAAAGACCCCAAGAACACAGGAGGCTGGAATGAC
TACAAGAACAACAACTCTTCCAACTGGGGAGGAGGACGACCTGATGAAAAGACACCTTCCTCTTGGAATG
AGAATCCCAGCAAGGATCAGGGGTGGGGAGGTGGACGCCAGCCCAATCAAGGATGGTCTTCTGGAAAGAA
TGGTTGGGGGGAGGAAGTCGATCAGACAAAAAACAGCAATTGGGAAAGTTCTGCAAGTAAACCTGTGTCT
GGGTGGGGTGAAGGAGGGCAGAATGAAATCGGGACTTGGGGTAATGGTGGCAATGCAAGCCTAGCTTCAA
AAGGTGGGTGGGAGGATTGCAAAAGATCCCCAGCATGGAATGAGACGGGCCGACAGCCCAATTCCTGGAA
TAAACAACACCAACAGCAGCAGCCCCCACAGCAGCCGCCGCCACCACAACCAGAGGCTTCTGGTTCGTGG
GGAGGCCCACCCCCACCACCTCCAGGCAACGTTCGACCTTCCAATTCCAGCTGGAGCAGCGGGCCACAGC
CTGCAACACCTAAGGATGAGGAACCCAGTGGTTGGGAAGAGCCATCCCCACAGTCAATTAGTCGGAAAAT
GGACATTGATGATGGCACTTCAGCATGGGGAGACCCTAACAGTTATAACTACAAGAATGTGAATCTGTGG
GATAAGAATTCCCAAGGGGGCCCAGCACCTCGAGAACCAAACCTGCCCACCCCAATGACCAGTAAATCGG
CATCAGTCTGGAGCAAAAGCACACCACCTGCTCCAGATAATGGTACTTCCGCTTGGGGTGAGCCAAATGA
AAGCAGTCCTGGGTGGGGCGAGATGGATGATACAGGAGCATCGACCACAGGCTGGGGGAACACGCCCGCC
AACGCTCCCAATGCCATGAAGCCTAATTCCAAATCTATGCAAGACGGCTGGGGGGAGAGTGACGGGCCAG
TCACAGGAGCTCGCCATCCCAGCTGGGAAGAGGAGGAGGATGGAGGAGTCTGGAACACCACTGGCTCTCA
GGGCAGTGCTTCCTCCCACAACTCAGCAAGCTGGGGACAAGGAGGAAAGAAACAAATGAAGTGCTCACTC
AAAGGAGGAAACAATGATTCATGGATGAATCCTCTTGCCAAACAGTTTTCAAATATGGGATTGCTGAGTC
AGACTGAAGATAATCCAAGCAGCAAAATGGATTTGTCTGTAGGAAGCCTTTCAGATAAAAAATTTGATGT
GGACAAGCGAGCGATGAATCTCGGGGATTTTAATGATATCATGAGGAAGGATCGATCTGGGTTCCGTCCA
CCTAATTCCAAAGACATGGGAACCACAGATAGTGGGCCTTATTTTGAGAAGCTGACTTTGCCTTTCTCCA
ATCAAGATGGGTGCCTTGGGGATGAGGCTCCCTGCTCTCCCTTCTCCCCTTCTCCCAGCTACAAGCTGTC
TCCCTCTGGTTCCACACTACCCAACGTCAGCCTTGGAGCAATCGGCACAGGGCTCAACCCCCAAAACTTC
GCTGCTAGACAAGGCGGTAGTCATGGTTTGTTTGGAAACAGCACAGCACAATCGAGAGGTCTGCACACAC
CCGTGCAGCCACTAAATTCTTCTCCCAGTCTCCGGGCGCAAGTGCCTCCCCAGTTTATTTCCCCCCAGGT
TTCTGCCTCAATGCTCAAGCAGTTTCCCAACAGTGGCCTGAGTCCAGGTCTTTTCAATGTGGGGCCCCAG
TTATCTCCTCAACAAATTGCCATGCTGAGCCAGCTTCCACAAATTCCCCAGTTTCAGTTGGCATGTCAGC
TTCTCTTGCAGCAGCAGCAACAGCAGCAGTTGTTACAGAACCAGAGAAAGATTTCTCAAGCTGTACGCCA
ACAGCAAGAGCAGCAGCTGGCTCGAATGGTGAGTGCACTGCAGCAGCAGCAGCAGCAGCAGCAGAGGCAG
CCAGGCATGAAGCACTCGCCCTCTCATCCTGTTGGGCCCAAGCCGCATCTGGACAACATGGTACCCAACG
CATTGAATGTGGGGCTCCCAGACCTTCAAACCAAAGGGCCAATACCTGGATATGGTTCTGGCTTCAGCTC
TGGCGGCATGGACTATGGCATGGTTGGTGGGAAGGAGGCTGGAACCGAGTCTCGCTTTAAACAGTGGACC
TCCATGATGGAGGGGCTGCCCTCTGTAGCCACACAGGAAGCCAATATGCACAAAAATGGCGCTATAGTGG
CCCCTGGTAAAACCCGGGGAGGGTCACCGTACAACCAGTTTGATATCATCCCTGGTGACACACTGGGTGG
CCATACGGGTCCTGCTGGTGATAGCTGGTTACCTGCCAAATCTCCACCAACAAATAAAATCGGAAGTAAA
TCCAGCAATGCCAGTTGGCCTCCAGAATTCCAACCAGGAGTGCCATGGAAAGGTATCCAAAACATTGACC
CTGAATCTGACCCCTATGTCACCCCAGGAAGTGTGCTGGGGGGTACAGCCACATCTCCCATTGTAGATAC
TGACCACCAACTGCTGCGGGATAACACCACAGGGTCTAATTCTTCCCTCAACACCTCGCTGCCTTCACCT
GGTGCCTGGCCCTACAGTGCCTCTGACAACTCCTTTACCAACGTTCATAGCACTTCAGCAAAGTTCCCTG
ATTACAAATCAACATGGTCCCCAGATCCCATAGGACACAACCCCACTCATCTCTCCAACAAGATGTGGAA
AAACCATATTTCCTCCAGGAACACTACACCGCTGCCCCGCCCACCTCCTGGTCTGACCAACCCCAAACCA
TCATCTCCCTGGAGCAGCACAGCACCCCGATCAGTCAGGGGGTGGGGGACACAGGACTCACGGCTCGCCT
CGGCCTCTACCTGGAGTGATGGTGGCTCAGTTCGTCCTAGTTACTGGCTGGTTCTTCACAATCTCACCCC
ACAGATTGATGGGTCAACCTTGAGAACGATCTGCATGCAGCATGGCCCACTGCTGACATTCCATCTGAAT
CTAACCCAGGGCACTGCCCTGATCCGATACAGCACCAAACAGGAGGCGGCCAAGGCCCAAACTGCACTGC
ACATGTGTGTGTTGGGAAACACTACCATCCTTGCTGAGTTTGCCACTGATGATGAAGTCAGCCGCTTTCT
GGCACAAGCTCAGCCCCCTACACCTGCAGCAACCCCAAGTGCGCCAGCTGCGGGGTGGCAGTCGCTGGAG
ACCGGCCAGAACCAGTCAGATCCCGTGGGACCTGCTCTGAATCTTTTTGGTGGGTCCACTGGGCTCGGGC
AGTGGAGCAGCAGCGCTGGTGGCAGCAGCGGGGCCGATCTTGCTGGCGCTTCATTGTGGGGGCCCCCAAA
CTATTCTTCTAGCTTATGGGGAGTCCCAACGGTGGAAGATCCCCATAGGATGGGCAGCCCTGCTCCTTTA
CTACCTGGTGACCTTCTGGGAGGAGGGTCGGATTCAATCTGA

Translation (1833 aa):
MREKEQEREEQLMEDKKRKKEDKKKKEATQKVTEQKTKVPEVTKPSLSQPTAASPIGSSPSPPVNGGNNA
KRVAVPNGQPPSAARYMPREVPPRFRCQQDHKVLLKRGQPPPPSCMLLGGGAGPPPCTAPGANPNNAQVT
GALLQSESGTAPDSTLGGAAASNYANSTWGSGASSNNGTSPNPIHIWDKVIVDGSDMEEWPCIASKDTES
SSENTTDNNSASNPGSEKSTLPGSTTSNKGKGSQCQSASSGNECNLGVWKSDPKAKSVQSSNSTTENNNG
LGNWRNVSGQDRIGPGSGFSNFNPNSNPSAWPALVQEGTSRKGALETDNSNSSAQVSTVGQTSREQQSKM
ENAGVNFVVSGREQAQIHNTDGPKNGNTNSLNLSSPNPMENKGMPFGMGLGNTSRSTDAPSQSTGDRKTG
SVGSWGAARGPSGTDTVSGQSNSGNNGNNGKEREDSWKGASVQKSTGSKNDSWDNNNRSTGGSWNFGPQD
SNDNKWGEGNKMTSGVSQGEWKQPTGSDELKIGEWSGPNQPNSSTGAWDNQKGHPLPENQGNAQAPCWGR
SSSSTGSEVGGQSTGSNHKAGSSDSHNSGRRSYRPTHPDCQAVLQTLLSRTDLDPRVLSNTGWGQTQIKQ
DTVWDIEEVPRPEGKSDKGTEGWESAATQTKNSGGWGDAPSQSNQMKSGWGELSASTEWKDPKNTGGWND
YKNNNSSNWGGGRPDEKTPSSWNENPSKDQGWGGGRQPNQGWSSGKNGWGEEVDQTKNSNWESSASKPVS
GWGEGGQNEIGTWGNGGNASLASKGGWEDCKRSPAWNETGRQPNSWNKQHQQQQPPQQPPPPQPEASGSW
GGPPPPPPGNVRPSNSSWSSGPQPATPKDEEPSGWEEPSPQSISRKMDIDDGTSAWGDPNSYNYKNVNLW
DKNSQGGPAPREPNLPTPMTSKSASVWSKSTPPAPDNGTSAWGEPNESSPGWGEMDDTGASTTGWGNTPA
NAPNAMKPNSKSMQDGWGESDGPVTGARHPSWEEEEDGGVWNTTGSQGSASSHNSASWGQGGKKQMKCSL
KGGNNDSWMNPLAKQFSNMGLLSQTEDNPSSKMDLSVGSLSDKKFDVDKRAMNLGDFNDIMRKDRSGFRP
PNSKDMGTTDSGPYFEKLTLPFSNQDGCLGDEAPCSPFSPSPSYKLSPSGSTLPNVSLGAIGTGLNPQNF
AARQGGSHGLFGNSTAQSRGLHTPVQPLNSSPSLRAQVPPQFISPQVSASMLKQFPNSGLSPGLFNVGPQ
LSPQQIAMLSQLPQIPQFQLACQLLLQQQQQQQLLQNQRKISQAVRQQQEQQLARMVSALQQQQQQQQRQ
PGMKHSPSHPVGPKPHLDNMVPNALNVGLPDLQTKGPIPGYGSGFSSGGMDYGMVGGKEAGTESRFKQWT
SMMEGLPSVATQEANMHKNGAIVAPGKTRGGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPTNKIGSK
SSNASWPPEFQPGVPWKGIQNIDPESDPYVTPGSVLGGTATSPIVDTDHQLLRDNTTGSNSSLNTSLPSP
GAWPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIGHNPTHLSNKMWKNHISSRNTTPLPRPPPGLTNPKP
SSPWSSTAPRSVRGWGTQDSRLASASTWSDGGSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLN
LTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLAQAQPPTPAATPSAPAAGWQSLE
TGQNQSDPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPPNYSSSLWGVPTVEDPHRMGSPAPL
LPGDLLGGGSDSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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