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Report for CCDS75476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75476.1 Public Homo sapiens 6 PRIM2 24 110 108 CCDS HistoryNCBI Gene:5558Re-query CCDS DB by CCDS ID:75476.1Re-query CCDS DB by GeneID:5558See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75476.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615550.5 ENSP00000484105.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000615550.5Link to Ensembl Protein Viewer:ENSP00000484105.1Re-query CCDS DB by Nucleotide ID:ENST00000615550Re-query CCDS DB by Protein ID:ENSP00000484105
Original member Current member NCBI NM_000947.5 NP_000938.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000947.5Link to Protein Sequence:NP_000938.2Re-query CCDS DB by Nucleotide ID:NM_000947Re-query CCDS DB by Protein ID:NP_000938Link to BLAST:NP_000938.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000938.2 509 P49643-1 509 100% 0 0

Chromosomal Locations for CCDS 75476.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57318446 57318599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57320457 57320560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57324201 57324280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57325925 57326045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57379901 57379996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57382031 57382168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57507387 57507454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57532411 57532483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57537440 57537625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57601093 57601219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57606375 57606457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57632133 57632201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57645928 57646158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGAGTTTTCTGGAAGAAAGTGGAGGAAGCTGAGGTTGGCAGGTGACCAGAGGAATGCTTCCTACCCTC
ATTGCCTTCAGTTTTACTTGCAGCCACCTTCTGAAAACATATCTTTAATAGAATTTGAAAACTTGGCTAT
TGATAGAGTTAAATTGTTAAAATCAGTTGAAAATCTTGGAGTGAGCTATGTGAAAGGAACTGAACAATAC
CAGAGTAAGTTGGAGAGTGAGCTTCGGAAGCTCAAGTTTTCCTACAGAGAAAACTTAGAAGATGAATATG
AACCACGAAGAAGAGATCATATTTCTCATTTTATTTTGCGGCTTGCTTATTGCCAGTCTGAAGAACTTAG
ACGCTGGTTCATTCAACAAGAAATGGATCTCCTTCGATTTAGATTTAGTATTTTACCCAAGGATAAAATT
CAGGATTTCTTAAAGGATAGCCAATTGCAGTTTGAGGCTATAAGTGATGAAGAGAAGACTCTTCGAGAAC
AGGAGATTGTTGCCTCATCACCAAGTTTAAGTGGACTTAAGTTGGGGTTCGAGTCCATTTATAAGATCCC
TTTTGCTGATGCTCTGGATTTGTTTCGAGGAAGGAAAGTCTATTTGGAAGATGGCTTTGCTTACGTACCA
CTTAAGGACATTGTGGCAATCATCCTGAATGAATTTAGAGCCAAACTGTCCAAGGCTTTGGCATTAACAG
CCAGGTCCTTGCCTGCTGTGCAGTCTGATGAAAGACTTCAGCCTCTGCTCAATCACCTCAGTCATTCCTA
CACTGGCCAAGATTACAGTACCCAGGGAAATGTTGGGAAGATTTCTTTAGATCAGATTGATTTGCTTTCT
ACCAAATCCTTCCCACCTTGCATGCGTCAGTTACATAAAGCCTTGCGGGAAAATCACCATCTTCGTCATG
GAGGCCGAATGCAGTATGGCCTATTTCTGAAGGGCATTGGTTTAACTTTGGAACAGGCATTGCAGTTCTG
GAAGCAAGAATTTATCAAAGGAAAGATGGATCCAGACAAGTTTGATAAAGGTTACTCTTACAACATCCGT
CACAGCTTTGGAAAGGAAGGCAAGAGGACAGACTATACACCTTTCAGTTGCCTGAAGATTATTCTGTCCA
ATCCACCAAGCCAAGGGGATTATCATGGGTGCCCATTCCGTCACAGTGATCCAGAGCTGCTGAAGCAAAA
GTTGCAGTCATACAAGATCTCTCCTGGAGGGATAAGCCAGATTTTGGATTTAGTAAAGGGGACACATTAC
CAGGTAGCCTGTCAAAAATACTTTGAGATGATACACAATGTGGATGATTGTGGCTTTTCTTTGAATCATC
CTAATCAGTTCTTTTGTGAGAGCCAACGTATTCTAAATGGTGGTAAAGACATAAAGAAGGAACCTATCCA
ACCAGAAACTCCTCAACCCAAACCAAGTGTCCAGAAAACCAAGGATGCATCATCTGCTCTGGCCTCTTTA
AATTCCTCTCTGGAAATGGATATGGAAGGACTAGAAGATTACTTTAGTGAAGATTCTTAG

Translation (509 aa):
MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQY
QSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKI
QDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYKIPFADALDLFRGRKVYLEDGFAYVP
LKDIVAIILNEFRAKLSKALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLS
TKSFPPCMRQLHKALRENHHLRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIR
HSFGKEGKRTDYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY
QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKTKDASSALASL
NSSLEMDMEGLEDYFSEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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