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Report for CCDS13092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13092.1 Public Homo sapiens 20 CHGB 24 110 108 CCDS HistoryNCBI Gene:1114Re-query CCDS DB by CCDS ID:13092.1Re-query CCDS DB by GeneID:1114See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13092.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378961.9 ENSP00000368244.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378961.9Link to Ensembl Protein Viewer:ENSP00000368244.4Re-query CCDS DB by Nucleotide ID:ENST00000378961Re-query CCDS DB by Protein ID:ENSP00000368244
Original member Current member NCBI NM_001819.3 NP_001810.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001819.3Link to Protein Sequence:NP_001810.2Re-query CCDS DB by Nucleotide ID:NM_001819Re-query CCDS DB by Protein ID:NP_001810Link to BLAST:NP_001810.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001810.2 677 P05060 677 100% 0 0

Chromosomal Locations for CCDS 13092.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 5911634 5911682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5916326 5916372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5916826 5916919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5922335 5924100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5924972 5925049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGCAGCCAACGCTGCTTCTCAGCCTCCTGGGAGCCGTGGGGCTGGCGGCTGTCAATTCCATGCCAGTGG
ATAACAGGAACCACAATGAAGGAATGGTGACTCGCTGCATCATTGAGGTCCTCTCAAATGCCTTGTCGAA
GTCCAGCGCTCCACCCATCACCCCTGAGTGCCGCCAAGTCCTGAAGACGAGTAGAAAAGACGTCAAAGAC
AAAGAGACAACTGAAAATGAAAACACAAAGTTTGAAGTAAGATTGTTAAGAGACCCAGCTGATGCCTCGG
AAGCCCACGAGTCCTCCAGCAGGGGAGAGGCAGGAGCCCCAGGGGAGGAGGACATCCAAGGCCCAACAAA
GGCAGACACAGAGAAATGGGCAGAGGGAGGCGGGCACAGCCGAGAGCGAGCGGATGAGCCCCAGTGGAGC
CTCTATCCCTCCGACAGCCAAGTCTCTGAAGAAGTGAAGACACGCCATTCTGAGAAGAGCCAGAGAGAGG
ATGAGGAGGAGGAGGAGGGAGAGAACTATCAAAAAGGGGAGCGAGGGGAAGATAGCAGTGAAGAGAAACA
CCTTGAAGAGCCAGGAGAGACACAAAACGCTTTTCTCAATGAAAGAAAGCAGGCTTCAGCTATAAAAAAA
GAGGAGTTAGTGGCCAGATCGGAAACACATGCTGCCGGGCATTCTCAGGAGAAGACACATAGCCGAGAGA
AGAGTAGCCAGGAGAGTGGAGAGGAGACAGGGAGCCAGGAGAATCACCCCCAGGAGTCTAAAGGCCAACC
CCGAAGCCAGGAAGAATCTGAGGAAGGTGAGGAAGATGCCACCTCTGAGGTGGACAAACGACGCACGAGG
CCCAGACACCACCACGGGAGGAGCAGGCCCGACAGGTCCTCTCAAGGAGGGAGTCTTCCCTCTGAGGAAA
AGGGACACCCCCAGGAGGAATCTGAGGAGTCAAACGTCAGCATGGCCAGTTTAGGGGAAAAGAGGGACCA
CCATTCAACCCACTACAGGGCTTCAGAGGAAGAACCTGAATATGGAGAAGAAATAAAGGGTTATCCAGGC
GTCCAGGCCCCTGAGGACCTGGAGTGGGAGCGCTATAGGGGCAGAGGAAGTGAAGAATACAGGGCTCCAA
GACCTCAGAGTGAGGAGAGTTGGGATGAGGAGGACAAGAGAAACTACCCCAGCTTAGAGCTTGATAAGAT
GGCACATGGATATGGTGAAGAAAGTGAGGAAGAGAGGGGCCTTGAGCCGGGAAAGGGACGCCATCACAGA
GGCAGGGGAGGGGAGCCACGTGCCTATTTCATGTCTGACACCAGAGAAGAGAAAAGGTTCTTGGGTGAAG
GACACCACCGTGTCCAAGAAAACCAGATGGACAAGGCAAGGAGGCATCCACAAGGTGCGTGGAAAGAGCT
GGACAGAAATTATCTCAACTACGGTGAGGAAGGAGCCCCAGGGAAGTGGCAGCAGCAGGGAGACCTGCAG
GACACTAAAGAAAACAGGGAGGAAGCTAGGTTTCAAGATAAACAATATAGCTCCCATCACACAGCTGAAA
AGAGGAAGAGATTAGGGGAACTGTTCAACCCATACTACGACCCTCTCCAGTGGAAGAGCAGCCATTTTGA
AAGAAGAGACAACATGAATGACAATTTTCTCGAGGGTGAGGAGGAAAATGAGCTGACCTTGAACGAGAAG
AATTTCTTCCCAGAATACAACTATGACTGGTGGGAGAAAAAGCCCTTCTCTGAGGATGTGAACTGGGGGT
ATGAGAAGAGAAACCTCGCCAGGGTCCCCAAGCTGGACCTGAAAAGGCAATATGACAGGGTGGCCCAACT
GGACCAGCTCCTTCACTACAGGAAGAAGTCAGCTGAGTTTCCAGACTTCTATGATTCTGAGGAGCCGGTG
AGCACCCACCAGGAGGCAGAAAATGAAAAGGACAGGGCTGACCAGACAGTCCTGACAGAGGACGAGAAAA
AAGAACTCGAAAACTTGGCTGCAATGGATTTGGAACTACAGAAGATAGCTGAGAAATTCAGCCAAAGGGG
CTGA

Translation (677 aa):
MQPTLLLSLLGAVGLAAVNSMPVDNRNHNEGMVTRCIIEVLSNALSKSSAPPITPECRQVLKTSRKDVKD
KETTENENTKFEVRLLRDPADASEAHESSSRGEAGAPGEEDIQGPTKADTEKWAEGGGHSRERADEPQWS
LYPSDSQVSEEVKTRHSEKSQREDEEEEEGENYQKGERGEDSSEEKHLEEPGETQNAFLNERKQASAIKK
EELVARSETHAAGHSQEKTHSREKSSQESGEETGSQENHPQESKGQPRSQEESEEGEEDATSEVDKRRTR
PRHHHGRSRPDRSSQGGSLPSEEKGHPQEESEESNVSMASLGEKRDHHSTHYRASEEEPEYGEEIKGYPG
VQAPEDLEWERYRGRGSEEYRAPRPQSEESWDEEDKRNYPSLELDKMAHGYGEESEEERGLEPGKGRHHR
GRGGEPRAYFMSDTREEKRFLGEGHHRVQENQMDKARRHPQGAWKELDRNYLNYGEEGAPGKWQQQGDLQ
DTKENREEARFQDKQYSSHHTAEKRKRLGELFNPYYDPLQWKSSHFERRDNMNDNFLEGEEENELTLNEK
NFFPEYNYDWWEKKPFSEDVNWGYEKRNLARVPKLDLKRQYDRVAQLDQLLHYRKKSAEFPDFYDSEEPV
STHQEAENEKDRADQTVLTEDEKKELENLAAMDLELQKIAEKFSQRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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