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Report for CCDS3961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3961.1 Public Homo sapiens 5 HSPB3 24 110 108 CCDS HistoryNCBI Gene:8988Re-query CCDS DB by CCDS ID:3961.1Re-query CCDS DB by GeneID:8988See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3961.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302005.3 ENSP00000303394.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302005.3Link to Ensembl Protein Viewer:ENSP00000303394.1Re-query CCDS DB by Nucleotide ID:ENST00000302005Re-query CCDS DB by Protein ID:ENSP00000303394
Original member Current member NCBI NM_006308.3 NP_006299.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006308.3Link to Protein Sequence:NP_006299.1Re-query CCDS DB by Nucleotide ID:NM_006308Re-query CCDS DB by Protein ID:NP_006299Link to BLAST:NP_006299.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006299.1 150 Q12988 150 100% 0 0

Chromosomal Locations for CCDS 3961.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 54455790 54456242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGGCAAAAATCATTTTGAGGCACCTCATAGAGATTCCAGTGCGTTACCAGGAAGAGTTTGAAGCTCGAG
GTCTAGAAGACTGCAGGCTGGATCATGCTTTATATGCACTGCCTGGGCCAACCATCGTGGACCTGAGGAA
AACCAGGGCAGCGCAGTCTCCTCCAGTGGACTCAGCGGCAGAGACGCCACCCCGAGAAGGCAAATCCCAC
TTTCAGATCCTGCTGGACGTGGTCCAGTTCCTCCCTGAAGACATCATCATTCAGACCTTCGAAGGCTGGC
TGCTGATAAAAGCACAACACGGAACCAGAATGGATGAGCACGGTTTTATCTCAAGAAGCTTCACCCGACA
GTACAAACTACCAGATGGTGTGGAAATCAAAGATTTGTCTGCAGTCCTCTGTCATGATGGAATTTTGGTG
GTGGAAGTAAAGGATCCAGTTGGGACTAAGTGA

Translation (150 aa):
MAKIILRHLIEIPVRYQEEFEARGLEDCRLDHALYALPGPTIVDLRKTRAAQSPPVDSAAETPPREGKSH
FQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIKDLSAVLCHDGILV
VEVKDPVGTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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