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Report for CCDS1341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1341.1 Public Homo sapiens 1 STX6 24 110 108 CCDS HistoryNCBI Gene:10228Re-query CCDS DB by CCDS ID:1341.1Re-query CCDS DB by GeneID:10228See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258301.6 ENSP00000258301.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258301.6Link to Ensembl Protein Viewer:ENSP00000258301.5Re-query CCDS DB by Nucleotide ID:ENST00000258301Re-query CCDS DB by Protein ID:ENSP00000258301
Original member Current member NCBI NM_005819.6 NP_005810.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005819.6Link to Protein Sequence:NP_005810.1Re-query CCDS DB by Nucleotide ID:NM_005819Re-query CCDS DB by Protein ID:NP_005810Link to BLAST:NP_005810.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005810.1 255 O43752-1 255 100% 0 0

Chromosomal Locations for CCDS 1341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180976570 180976646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180984677 180984771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180988239 180988345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180989984 180990109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180993363 180993425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181002606 181002700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181005294 181005463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181022639 181022673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGTCCATGGAGGACCCCTTCTTTGTGGTGAAAGGAGAGGTACAGAAAGCAGTCAACACTGCCCAGGGAT
TGTTTCAGAGATGGACAGAGCTCCTCCAGGACCCCTCCACAGCAACAAGGGAAGAAATCGACTGGACCAC
CAACGAGCTGAGAAATAACCTCCGGAGCATAGAGTGGGATCTAGAGGACCTTGATGAAACCATCAGCATA
GTTGAAGCAAATCCTAGAAAATTTAACCTTGATGCAACTGAATTGAGTATAAGAAAAGCCTTCATTACAA
GTACTCGGCAAGTTGTCAGGGACATGAAAGATCAGATGTCAACTTCATCTGTGCAGGCATTAGCTGAAAG
AAAAAATAGACAGGCACTGCTGGGAGACAGTGGCAGCCAGAACTGGAGCACTGGAACAACAGATAAATAT
GGGCGTCTGGACCGAGAGCTCCAGAGAGCCAATTCTCATTTCATTGAGGAGCAGCAGGCACAGCAGCAGT
TGATCGTGGAACAGCAGGATGAGCAGTTGGAGCTGGTCTCTGGCAGCATCGGGGTGCTGAAGAACATGTC
CCAGCGCATCGGAGGGGAGCTGGAGGAACAGGCAGTTATGTTGGAAGATTTCTCTCACGAATTGGAGAGC
ACTCAGTCCCGGCTGGACAATGTGATGAAGAAACTTGCAAAAGTATCTCATATGACCAGTGATCGGCGCC
AATGGTGTGCCATAGCCATCCTCTTTGCAGTCCTGTTGGTTGTGCTCATCCTCTTCTTAGTGCTGTGA

Translation (255 aa):
MSMEDPFFVVKGEVQKAVNTAQGLFQRWTELLQDPSTATREEIDWTTNELRNNLRSIEWDLEDLDETISI
VEANPRKFNLDATELSIRKAFITSTRQVVRDMKDQMSTSSVQALAERKNRQALLGDSGSQNWSTGTTDKY
GRLDRELQRANSHFIEEQQAQQQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELES
TQSRLDNVMKKLAKVSHMTSDRRQWCAIAILFAVLLVVLILFLVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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