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Report for CCDS33691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33691.1 Public Homo sapiens 3 LHFPL4 24 110 108 CCDS HistoryNCBI Gene:375323Re-query CCDS DB by CCDS ID:33691.1Re-query CCDS DB by GeneID:375323See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33691.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287585.8 ENSP00000287585.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287585.8Link to Ensembl Protein Viewer:ENSP00000287585.6Re-query CCDS DB by Nucleotide ID:ENST00000287585Re-query CCDS DB by Protein ID:ENSP00000287585
Original member Current member NCBI NM_198560.3 NP_940962.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198560.3Link to Protein Sequence:NP_940962.1Re-query CCDS DB by Nucleotide ID:NM_198560Re-query CCDS DB by Protein ID:NP_940962Link to BLAST:NP_940962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940962.1 247 Q7Z7J7 247 100% 0 0

Chromosomal Locations for CCDS 33691.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9502211 9502311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9505967 9506203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9552274 9552679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGCTGCCCTCGCAGGAGGCCTCCAAGCTCTACCACGAGCACTACATGCGGAACTCGCGGGCCATCGGCG
TGCTGTGGGCCATCTTCACCATCTGCTTCGCCATCATCAACGTGGTGGTCTTCATCCAGCCCTACTGGGT
GGGCGACAGCGTGAGCACCCCCAAGCCTGGCTACTTCGGCCTCTTCCACTACTGCGTGGGCAGCGGGCTG
GCGGGCCGCGAGCTCACCTGCCGGGGCTCCTTCACCGACTTCAGCACCATCCCGTCCAGCGCCTTCAAGG
CGGCCGCCTTCTTCGTGCTGCTCTCCATGGTGCTGATCCTCGGCTGCATCACCTGCTTTTCGCTTTTCTT
CTTCTGCAACACGGCTACGGTCTACAAGATCTGCGCCTGGATGCAGCTCTTGGCAGCTCTGTGCCTCGTC
CTGGGCTGCATGATCTTTCCTGATGGCTGGGATGCCGAGACCATCCGGGACATGTGTGGGGCCAAGACGG
GGAAGTACTCCCTGGGGGACTGTTCAGTGCGCTGGGCATACATCCTGGCCATCATCGGCATCCTCAACGC
CCTCATCCTCTCCTTCCTCGCCTTCGTGCTGGGCAACCGGCAAACAGACCTGCTGCAGGAGGAGCTCAAG
CCGGAGAACAAAGATTTTGTGGGCTCTACAGTAAGCTCCGTGTTGCGGCCCGGGGGTGATGTCTCTGGAT
GGGGAGTCCTTCCCTGCCCCGTGGCTCACTCACAGGGACCCTGA

Translation (247 aa):
MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGL
AGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCNTATVYKICAWMQLLAALCLV
LGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALILSFLAFVLGNRQTDLLQEELK
PENKDFVGSTVSSVLRPGGDVSGWGVLPCPVAHSQGP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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