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Report for CCDS2513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2513.1 Public Homo sapiens 2 SH3BP4 24 110 108 CCDS HistoryNCBI Gene:23677Re-query CCDS DB by CCDS ID:2513.1Re-query CCDS DB by GeneID:23677See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2513.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344528.8 ENSP00000340237.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344528.8Link to Ensembl Protein Viewer:ENSP00000340237.4Re-query CCDS DB by Nucleotide ID:ENST00000344528Re-query CCDS DB by Protein ID:ENSP00000340237
Original member Current member EBI ENST00000392011.7 ENSP00000375867.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392011.7Link to Ensembl Protein Viewer:ENSP00000375867.2Re-query CCDS DB by Nucleotide ID:ENST00000392011Re-query CCDS DB by Protein ID:ENSP00000375867
Original member Current member EBI ENST00000409212.5 ENSP00000386862.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409212.5Link to Ensembl Protein Viewer:ENSP00000386862.1Re-query CCDS DB by Nucleotide ID:ENST00000409212Re-query CCDS DB by Protein ID:ENSP00000386862
Original member Current member NCBI NM_001371302.1 NP_001358231.1 Accepted alive Link to Nucleotide Sequence:NM_001371302.1Link to Protein Sequence:NP_001358231.1Re-query CCDS DB by Nucleotide ID:NM_001371302Re-query CCDS DB by Protein ID:NP_001358231Link to BLAST:NP_001358231.1
Original member Current member NCBI NM_001371303.1 NP_001358232.1 Accepted alive Link to Nucleotide Sequence:NM_001371303.1Link to Protein Sequence:NP_001358232.1Re-query CCDS DB by Nucleotide ID:NM_001371303Re-query CCDS DB by Protein ID:NP_001358232Link to BLAST:NP_001358232.1
Original member Current member NCBI NM_001371304.1 NP_001358233.1 Accepted alive Link to Nucleotide Sequence:NM_001371304.1Link to Protein Sequence:NP_001358233.1Re-query CCDS DB by Nucleotide ID:NM_001371304Re-query CCDS DB by Protein ID:NP_001358233Link to BLAST:NP_001358233.1
Original member Current member NCBI NM_001371305.1 NP_001358234.1 Accepted alive Link to Nucleotide Sequence:NM_001371305.1Link to Protein Sequence:NP_001358234.1Re-query CCDS DB by Nucleotide ID:NM_001371305Re-query CCDS DB by Protein ID:NP_001358234Link to BLAST:NP_001358234.1
Original member Current member NCBI NM_001371306.1 NP_001358235.1 Accepted alive Link to Nucleotide Sequence:NM_001371306.1Link to Protein Sequence:NP_001358235.1Re-query CCDS DB by Nucleotide ID:NM_001371306Re-query CCDS DB by Protein ID:NP_001358235Link to BLAST:NP_001358235.1
Original member Current member NCBI NM_014521.3 NP_055336.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014521.3Link to Protein Sequence:NP_055336.1Re-query CCDS DB by Nucleotide ID:NM_014521Re-query CCDS DB by Protein ID:NP_055336Link to BLAST:NP_055336.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358231.1 963 Q9P0V3-1 963 100% 0 0
NP_001358232.1 963 Q9P0V3-1 963 100% 0 0
NP_001358233.1 963 Q9P0V3-1 963 100% 0 0
NP_001358234.1 963 Q9P0V3-1 963 100% 0 0
NP_001358235.1 963 Q9P0V3-1 963 100% 0 0
NP_055336.1 963 Q9P0V3-1 963 100% 0 0

Chromosomal Locations for CCDS 2513.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 235035003 235035120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 235040888 235043247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 235052562 235052750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 235053592 235053816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGGCGGCTCAGCGGATCCGAGCGGCCAACTCCAATGGCCTCCCTCGCTGCAAGTCAGAGGGGACCCTGA
TTGACCTGAGCGAAGGGTTTTCAGAGACGAGCTTTAATGACATCAAAGTGCCTTCTCCCAGTGCCTTGCT
CGTAGACAACCCCACACCTTTCGGAAATGCAAAGGAAGTGATTGCGATCAAGGACTATTGCCCCACCAAC
TTCACCACACTGAAGTTCTCCAAGGGCGACCATCTCTACGTCTTGGACACATCTGGCGGTGAGTGGTGGT
ACGCACACAACACCACCGAAATGGGCTACATCCCCTCCTCCTATGTGCAGCCCTTGAACTACCGGAACTC
AACACTGAGTGACAGCGGTATGATTGATAATCTTCCAGACAGCCCAGACGAGGTAGCCAAGGAGCTGGAG
CTGCTCGGGGGATGGACAGATGACAAAAAAGTACCAGGCAGAATGTACAGTAATAACCCTTTCTGGAATG
GGGTCCAGACCAATCCATTTCTGAATGGGAACGTGCCCGTCATGCCCAGCCTGGATGAGCTGAATCCCAA
AAGTACTGTGGATTTGCTCCTTTTTGACGCAGGTACATCCTCCTTCACCGAATCCAGCTCAGCCACCACG
AATAGCACTGGCAACATCTTCGATGAGCTTCCAGTCACAAACGGACTCCACGCAGAGCCGCCGGTCAGGC
GGGACAACCCCTTCTTCAGAAGCAAGCGCTCCTACAGTCTCTCGGAACTCTCCGTCCTCCAAGCCAAGTC
CGATGCTCCCACATCGTCGAGTTTCTTCACCGGCTTGAAATCACCTGCCCCCGAGCAATTTCAGAGCCGG
GAGGATTTTCGAACTGCCTGGCTAAACCACAGGAAGCTGGCCCGGTCTTGCCACGACCTGGACTTGCTTG
GCCAAAGCCCTGGTTGGGGCCAGACCCAAGCCGTGGAGACAAACATCGTGTGCAAGCTGGATAGCTCCGG
GGGTGCTGTCCAGCTTCCTGACACCAGCATCAGCATCCACGTGCCCGAGGGCCACGTCGCCCCTGGGGAG
ACCCAGCAGATCTCCATGAAAGCCCTGCTGGACCCCCCGCTGGAGCTCAACAGTGACAGGTCCTGCAGCA
TCAGCCCTGTGCTGGAGGTCAAGCTGAGCAACCTGGAGGTGAAAACCTCTATCATCTTGGAGATGAAAGT
GTCAGCCGAGATAAAAAATGACCTTTTTAGCAAAAGCACAGTGGGCCTCCAGTGCCTGAGGAGCGACTCG
AAGGAAGGGCCATATGTCTCCGTCCCGCTCAACTGCAGCTGTGGGGACACGGTCCAGGCACAGCTGCACA
ACCTGGAGCCCTGTATGTACGTGGCTGTCGTGGCCCATGGCCCAAGCATCCTCTACCCTTCCACCGTGTG
GGACTTCATCAATAAAAAAGTCACAGTGGGTCTCTACGGCCCTAAACACATCCACCCATCCTTCAAGACG
GTAGTGACCATTTTTGGGCATGACTGTGCCCCAAAGACGCTCCTGGTCAGCGAGGTCACACGCCAGGCAC
CCAACCCTGCCCCGGTGGCCCTGCAGCTGTGGGGGAAGCACCAGTTCGTTTTGTCCAGGCCCCAGGATCT
CAAGGTCTGTATGTTTTCCAATATGACGAATTACGAGGTCAAAGCCAGCGAGCAGGCCAAAGTGGTGCGA
GGATTCCAGCTGAAGCTGGGCAAGGTGAGCCGCCTGATCTTCCCCATCACCTCCCAGAACCCCAACGAGC
TCTCTGACTTCACGCTGCGGGTTCAGGTGAAGGACGACCAGGAGGCCATCCTCACCCAGTTTTGTGTCCA
GACTCCTCAGCCACCCCCTAAAAGTGCCATCAAGCCTTCCGGGCAAAGGAGGTTTCTCAAGAAGAACGAA
GTCGGGAAAATCATCCTGTCCCCGTTTGCCACCACTACAAAGTACCCGACTTTCCAGGACCGCCCGGTGT
CCAGCCTCAAGTTTGGTAAGTTGCTCAAGACTGTGGTGCGGCAGAACAAGAACCACTACCTGCTGGAGTA
CAAGAAGGGCGACGGGATCGCCCTGCTCAGCGAGGAGCGGGTCAGGCTCCGGGGCCAGCTGTGGACCAAG
GAGTGGTACATCGGCTACTACCAGGGCAGGGTGGGCCTCGTGCACACCAAGAACGTGCTGGTGGTCGGCA
GGGCCCGGCCCAGCCTGTGCTCGGGCCCCGAGCTGAGCACCTCGGTGCTGCTGGAGCAGATCCTGCGGCC
CTGCAAATTCCTCACGTACATCTATGCCTCCGTGAGGACCCTGCTCATGGAGAACATCAGCAGCTGGCGC
TCCTTCGCTGACGCCCTGGGCTACGTGAACCTGCCGCTCACCTTTTTCTGCCGGGCAGAGCTGGATAGTG
AGCCCGAGCGGGTGGCGTCCGTCCTAGAAAAGCTGAAGGAGGACTGTAACAACACTGAGAACAAAGAACG
GAAGTCCTTCCAGAAGGAGCTTGTGATGGCCCTACTGAAGATGGACTGCCAGGGCCTGGTGGTCAGACTC
ATCCAGGACTTTGTGCTCCTGACCACGGCTGTAGAGGTGGCCCAGCGCTGGCGGGAGCTGGCTGAGAAGC
TGGCCAAGGTCTCCAAGCAGCAGATGGACGCCTACGAGTCTCCCCACCGGGACAGGAACGGGGTTGTGGA
CAGCGAGGCCATGTGGAAGCCTGCGTATGACTTCTTACTCACCTGGAGCCATCAGATCGGGGACAGCTAC
CGGGATGTCATCCAGGAGCTGCACCTGGGCCTGGACAAGATGAAAAACCCCATCACCAAGCGCTGGAAGC
ACCTCACTGGGACTCTGATCTTGGTGAACTCCCTGGACGTTCTGAGAGCAGCCGCCTTCAGCCCTGCGGA
CCAGGACGACTTCGTGATTTGA

Translation (963 aa):
MAAQRIRAANSNGLPRCKSEGTLIDLSEGFSETSFNDIKVPSPSALLVDNPTPFGNAKEVIAIKDYCPTN
FTTLKFSKGDHLYVLDTSGGEWWYAHNTTEMGYIPSSYVQPLNYRNSTLSDSGMIDNLPDSPDEVAKELE
LLGGWTDDKKVPGRMYSNNPFWNGVQTNPFLNGNVPVMPSLDELNPKSTVDLLLFDAGTSSFTESSSATT
NSTGNIFDELPVTNGLHAEPPVRRDNPFFRSKRSYSLSELSVLQAKSDAPTSSSFFTGLKSPAPEQFQSR
EDFRTAWLNHRKLARSCHDLDLLGQSPGWGQTQAVETNIVCKLDSSGGAVQLPDTSISIHVPEGHVAPGE
TQQISMKALLDPPLELNSDRSCSISPVLEVKLSNLEVKTSIILEMKVSAEIKNDLFSKSTVGLQCLRSDS
KEGPYVSVPLNCSCGDTVQAQLHNLEPCMYVAVVAHGPSILYPSTVWDFINKKVTVGLYGPKHIHPSFKT
VVTIFGHDCAPKTLLVSEVTRQAPNPAPVALQLWGKHQFVLSRPQDLKVCMFSNMTNYEVKASEQAKVVR
GFQLKLGKVSRLIFPITSQNPNELSDFTLRVQVKDDQEAILTQFCVQTPQPPPKSAIKPSGQRRFLKKNE
VGKIILSPFATTTKYPTFQDRPVSSLKFGKLLKTVVRQNKNHYLLEYKKGDGIALLSEERVRLRGQLWTK
EWYIGYYQGRVGLVHTKNVLVVGRARPSLCSGPELSTSVLLEQILRPCKFLTYIYASVRTLLMENISSWR
SFADALGYVNLPLTFFCRAELDSEPERVASVLEKLKEDCNNTENKERKSFQKELVMALLKMDCQGLVVRL
IQDFVLLTTAVEVAQRWRELAEKLAKVSKQQMDAYESPHRDRNGVVDSEAMWKPAYDFLLTWSHQIGDSY
RDVIQELHLGLDKMKNPITKRWKHLTGTLILVNSLDVLRAAAFSPADQDDFVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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