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Report for CCDS6312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6312.1 Public Homo sapiens 8 NUDCD1 24 110 108 CCDS HistoryNCBI Gene:84955Re-query CCDS DB by CCDS ID:6312.1Re-query CCDS DB by GeneID:84955See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6312.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239690.9 ENSP00000239690.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239690.9Link to Ensembl Protein Viewer:ENSP00000239690.4Re-query CCDS DB by Nucleotide ID:ENST00000239690Re-query CCDS DB by Protein ID:ENSP00000239690
Original member Current member NCBI NM_032869.4 NP_116258.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032869.4Link to Protein Sequence:NP_116258.2Re-query CCDS DB by Nucleotide ID:NM_032869Re-query CCDS DB by Protein ID:NP_116258Link to BLAST:NP_116258.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116258.2 583 Q96RS6-1 583 100% 0 0

Chromosomal Locations for CCDS 6312.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 109243009 109243301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109245322 109245481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109271005 109271130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109275352 109275496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109280968 109281172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109289751 109289933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109293344 109293524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109296384 109296569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109322309 109322463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 109333893 109334010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGAGGTGGCGGCTAATTGCTCCCTACGGGTGAAGAGACCTCTGTTGGATCCCCGCTTCGAGGGTTACA
AGCTCTCTCTTGAGCCGCTGCCTTGTTACCAGCTGGAGCTTGACGCAGCTGTGGCAGAGGTAAAACTTCG
AGATGATCAATATACACTGGAACACATGCATGCTTTTGGAATGTATAATTACCTGCACTGTGATTCATGG
TATCAAGACAGTGTCTACTATATTGATACCCTTGGAAGAATTATGAATTTAACAGTAATGCTGGACACTG
CCTTAGGAAAACCACGAGAGGTGTTTCGACTTCCTACAGATTTGACAGCATGTGACAACCGTCTTTGTGC
ATCTATCCATTTCTCATCTTCTACCTGGGTTACCTTGTCAGATGGAACTGGAAGATTGTATGTCATTGGA
ACAGGTGAACGTGGAAATAGCGCTTCTGAAAAATGGGAGATTATGTTTAATGAAGAACTTGGGGATCCTT
TTATTATAATTCACAGTATCTCACTGCTAAATGCTGAAGAACATTCTATAGCTACCCTACTTCTTCGAAT
AGAGAAAGAGGAATTGGATATGAAAGGAAGTGGTTTCTATGTTTCTCTGGAGTGGGTCACTATCAGTAAG
AAAAATCAAGATAATAAAAAATATGAAATTATTAAGCGTGATATTCTCCGTGGAAAGTCAGTGCCACATT
ATGCTGCTATTGAGCCTGATGGAAATGGTCTAATGATTGTATCCTACAAGTCTTTAACATTTGTTCAGGC
TGGTCAAGATCTTGAAGAAAATATGGATGAAGACATATCAGAGAAAATCAAAGAACCTCTGTATTACTGG
CAACAGACTGAAGATGATTTGACAGTAACCATACGGCTTCCAGAAGACAGTACTAAGGAGGACATTCAAA
TACAGTTTTTGCCTGATCACATCAACATTGTACTGAAGGATCACCAGTTTTTAGAAGGAAAACTCTATTC
ATCTATTGATCATGAAAGCAGTACATGGATAATTAAAGAGAGTAATAGCTTGGAGATTTCCTTGATTAAG
AAGAATGAAGGACTGACCTGGCCAGAGCTAGTAATTGGAGATAAACAAGGGGAACTTATAAGAGATTCAG
CCCAGTGTGCTGCAATAGCTGAACGTTTGATGCATTTGACCTCTGAAGAACTGAATCCAAATCCAGATAA
AGAAAAACCACCTTGCAATGCTCAAGAGTTAGAAGAATGTGATATTTTCTTTGAAGAGAGCTCCAGTTTA
TGCAGATTTGATGGCAATACATTAAAAACTACTCATGTGGTGAATCTTGGAAGCAACCAGTACCTTTTCT
CTGTCATAGTGGATCCTAAAGAAATGCCCTGCTTCTGTTTGCGCCATGATGTTGATGCCCTACTCTGGCA
ACCACACTCCAGCAAACAAGATGATATGTGGGAGCACATCGCAACTTTCAATGCTTTAGGCTATGTCCAA
GCATCAAAGAGAGACAAAAAATTTTTTGCCTGTGCTCCAAATTACTCGTATGCAGCCCTTTGTGAGTGCC
TTCGTCGAGTATTCATCTATCGTCAGCCTGCTCCCATGTCCACTGTACTTTACAACAGAAAGGAAGGCAG
GCAAGTAGGACAGGTTGCTAAGCAGCAAGTAGCAAGCCTAGAAACCAATGATCCTATTTTAGGATTTCAG
GCAACAAATGAGAGATTATTTGTTCTTACTACCAAAAACCTCTTTTTAATAAAAGTAAATACAGAGAATT
AA

Translation (583 aa):
MEVAANCSLRVKRPLLDPRFEGYKLSLEPLPCYQLELDAAVAEVKLRDDQYTLEHMHAFGMYNYLHCDSW
YQDSVYYIDTLGRIMNLTVMLDTALGKPREVFRLPTDLTACDNRLCASIHFSSSTWVTLSDGTGRLYVIG
TGERGNSASEKWEIMFNEELGDPFIIIHSISLLNAEEHSIATLLLRIEKEELDMKGSGFYVSLEWVTISK
KNQDNKKYEIIKRDILRGKSVPHYAAIEPDGNGLMIVSYKSLTFVQAGQDLEENMDEDISEKIKEPLYYW
QQTEDDLTVTIRLPEDSTKEDIQIQFLPDHINIVLKDHQFLEGKLYSSIDHESSTWIIKESNSLEISLIK
KNEGLTWPELVIGDKQGELIRDSAQCAAIAERLMHLTSEELNPNPDKEKPPCNAQELEECDIFFEESSSL
CRFDGNTLKTTHVVNLGSNQYLFSVIVDPKEMPCFCLRHDVDALLWQPHSSKQDDMWEHIATFNALGYVQ
ASKRDKKFFACAPNYSYAALCECLRRVFIYRQPAPMSTVLYNRKEGRQVGQVAKQQVASLETNDPILGFQ
ATNERLFVLTTKNLFLIKVNTEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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